RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 KRCC1Q9NPI7 259 aaPredicted RBP4.09□□□□□ -1.75
CD44-235ENST00000532339 TBC1D14Q9P2M4 693 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 FBXO9Q9UK97 447 aaPredicted RBP4.09□□□□□ -1.75
CD44-235ENST00000532339 MYO6Q9UM54 1294 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 ZNF236Q9UL36 1845 aa4.09□□□□□ -1.76
CD44-235ENST00000532339 DOCK1Q14185 1865 aa4.09□□□□□ -1.76
CD44-235ENST00000532339 EFCAB8A8MWE9 144 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 C19orf81C9J6K1 198 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 M0QYT0 321 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 DUSP11O75319 330 aaKnown RBP4.08□□□□□ -1.76
CD44-235ENST00000532339 CABYRO75952 493 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 NEURL1O76050 574 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 KCNK5O95279 499 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 PCCAP05165 728 aaPredicted RBP4.08□□□□□ -1.76
CD44-235ENST00000532339 SUPT20HL2P0C7V6 817 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 ATP1A3P13637 1013 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 CPA1P15085 419 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 EIF2S2P20042 333 aaKnown RBP4.08□□□□□ -1.76
CD44-235ENST00000532339 HOXA11P31270 313 aaPredicted RBP4.08□□□□□ -1.76
CD44-235ENST00000532339 GRK5P34947 590 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 MCM2P49736 904 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 FAM3BP58499 235 aaPredicted RBP4.08□□□□□ -1.76
CD44-235ENST00000532339 RPL15P61313 204 aaKnown RBP4.08□□□□□ -1.76
CD44-235ENST00000532339 VAMP2P63027 116 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 DEFB103AP81534 67 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 AKAP13Q12802 2813 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 MYO7AQ13402 2215 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 TRPC3Q13507 836 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 ITGA7Q13683 1181 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 RPS6KA2Q15349 733 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 CCDC6Q16204 474 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 HYIQ5T013 277 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 FAM180BQ6P0A1 224 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 TMEM57Q8N5G2 664 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 PCYOX1LQ8NBM8 494 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 ELP5Q8TE02 316 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 TBC1D22AQ8WUA7 517 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 ADAD1Q96M93 576 aaKnown RBP4.08□□□□□ -1.76
CD44-235ENST00000532339 NEK1Q96PY6 1258 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 COL12A1Q99715 3063 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 ASXL3Q9C0F0 2248 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 BRD8Q9H0E9 1235 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 OSBPL5Q9H0X9 879 aaPredicted RBP4.08□□□□□ -1.76
CD44-235ENST00000532339 CHODLQ9H9P2 273 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 DNAJC16Q9Y2G8 782 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 INSL5Q9Y5Q6 135 aa4.08□□□□□ -1.76
CD44-235ENST00000532339 ZFHX3Q15911 3703 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 CYP3A7-CYP3A51PA0A087WV96 503 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 CXorf65A6NEN9 183 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 KCNJ18B7U540 433 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 SNAP23O00161 211 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 ENTPD3O75355 529 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 LARGE1O95461 756 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 CYP3A4P08684 503 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 IQCF3P0C7M6 154 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 FGF3P11487 239 aaPredicted RBP4.07□□□□□ -1.76
CD44-235ENST00000532339 XBP1P17861 261 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 CYP3A7P24462 503 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 STAT1P42224 750 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 ENTPD1P49961 510 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 NR1H2P55055 460 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 FOXL2P58012 376 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 PDCLQ13371 301 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 KEAP1Q14145 624 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 DCTN1Q14203 1278 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 ENTPD8Q5MY95 495 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 CDC42EP5Q6NZY7 148 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 TRILQ7L0X0 811 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 GPSM1Q86YR5 675 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 ZNF843Q8N446 348 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 ZBTB44Q8NCP5 570 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 LSM14AQ8ND56 463 aaKnown RBP4.07□□□□□ -1.76
CD44-235ENST00000532339 NUDCD2Q8WVJ2 157 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 ZNF419Q96HQ0 510 aaPredicted RBP4.07□□□□□ -1.76
CD44-235ENST00000532339 MPHOSPH8Q99549 860 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 REEP2Q9BRK0 252 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 AGXT2Q9BYV1 514 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 DCLK3Q9C098 648 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 UPF3AQ9H1J1 476 aaKnown RBP4.07□□□□□ -1.76
CD44-235ENST00000532339 CCDC134Q9H6E4 229 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 IL21RQ9HBE5 538 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 PLAC1Q9HBJ0 212 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 CD93Q9NPY3 652 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 RNF146Q9NTX7 359 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 FBXO4Q9UKT5 387 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 RAB21Q9UL25 225 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 SLC12A4Q9UP95 1085 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 CNPY2Q9Y2B0 182 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 DERAQ9Y315 318 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 SMCHD1A6NHR9 2005 aa4.07□□□□□ -1.76
CD44-235ENST00000532339 GRIN2DO15399 1336 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 CLSPNQ9HAW4 1339 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 OR6C75A6NL08 312 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 B4E171 279 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 C5orf67F2Z3F1 127 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 STX16-NPEPL1H3BU86 382 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 STX16O14662 325 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 HEXIM1O94992 359 aaKnown RBP4.06□□□□□ -1.76
CD44-235ENST00000532339 TBX18O95935 607 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 CYP1A2P05177 515 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms