RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	KLHL1	Q9NR64	748 aa		4.61	□□□□□ -1.67
CD44-223	ENST00000526553	IRAK4	Q9NWZ3	460 aa		4.61	□□□□□ -1.67
CD44-223	ENST00000526553	DLGAP2	Q9P1A6	1054 aa		4.61	□□□□□ -1.67
CD44-223	ENST00000526553	KCNS2	Q9ULS6	477 aa		4.61	□□□□□ -1.67
CD44-223	ENST00000526553	LOXL2	Q9Y4K0	774 aa		4.61	□□□□□ -1.67
CD44-223	ENST00000526553	PDS5A	Q29RF7	1337 aa	Known RBP	4.61	□□□□□ -1.67
CD44-223	ENST00000526553	FAM237A	A0A1B0GTK4	181 aa		4.6	□□□□□ -1.67
CD44-223	ENST00000526553	LILRA5	A6NI73	299 aa		4.6	□□□□□ -1.67
CD44-223	ENST00000526553	RTN3	O95197	1032 aa	Predicted RBP	4.6	□□□□□ -1.67
CD44-223	ENST00000526553	CLEC3B	P05452	202 aa		4.6	□□□□□ -1.67
CD44-223	ENST00000526553	KRT10	P13645	584 aa		4.6	□□□□□ -1.67
CD44-223	ENST00000526553	ZNF132	P52740	706 aa		4.6	□□□□□ -1.67
CD44-223	ENST00000526553	NAP1L1	P55209	391 aa	Known RBP	4.6	□□□□□ -1.67
CD44-223	ENST00000526553	FOXM1	Q08050	763 aa		4.6	□□□□□ -1.67
CD44-223	ENST00000526553	CSTF3	Q12996	717 aa	Known RBP	4.6	□□□□□ -1.67
CD44-223	ENST00000526553	SYT16	Q17RD7	645 aa		4.6	□□□□□ -1.67
CD44-223	ENST00000526553	DUS1L	Q6P1R4	473 aa	Known RBP	4.6	□□□□□ -1.67
CD44-223	ENST00000526553	TMEM219	Q86XT9	240 aa		4.6	□□□□□ -1.67
CD44-223	ENST00000526553	ODF3L1	Q8IXM7	274 aa		4.6	□□□□□ -1.67
CD44-223	ENST00000526553	MUC20	Q8N307	709 aa	Predicted RBP	4.6	□□□□□ -1.67
CD44-223	ENST00000526553	SPATA3	Q8NHX4	192 aa		4.6	□□□□□ -1.67
CD44-223	ENST00000526553	CD101	Q93033	1021 aa		4.6	□□□□□ -1.67
CD44-223	ENST00000526553	ABTB1	Q969K4	478 aa	Predicted RBP	4.6	□□□□□ -1.67
CD44-223	ENST00000526553	IGSF8	Q969P0	613 aa		4.6	□□□□□ -1.67
CD44-223	ENST00000526553	MMAB	Q96EY8	250 aa	Predicted RBP	4.6	□□□□□ -1.67
CD44-223	ENST00000526553	RRNAD1	Q96FB5	475 aa	Known RBP	4.6	□□□□□ -1.67
CD44-223	ENST00000526553	CDCA5	Q96FF9	252 aa		4.6	□□□□□ -1.67
CD44-223	ENST00000526553	C7orf26	Q96N11	449 aa		4.6	□□□□□ -1.67
CD44-223	ENST00000526553	INPP4A	Q96PE3	977 aa	Predicted RBP	4.6	□□□□□ -1.67
CD44-223	ENST00000526553	ACOX2	Q99424	681 aa		4.6	□□□□□ -1.67
CD44-223	ENST00000526553	CMKLR1	Q99788	373 aa		4.6	□□□□□ -1.67
CD44-223	ENST00000526553	PCGF1	Q9BSM1	259 aa		4.6	□□□□□ -1.67
CD44-223	ENST00000526553	VPS33B	Q9H267	617 aa		4.6	□□□□□ -1.67
CD44-223	ENST00000526553	PLEKHA5	Q9HAU0	1116 aa		4.6	□□□□□ -1.67
CD44-223	ENST00000526553	FBRSL1	Q9HCM7	1045 aa	Known RBP	4.6	□□□□□ -1.67
CD44-223	ENST00000526553	TBC1D22B	Q9NU19	505 aa		4.6	□□□□□ -1.67
CD44-223	ENST00000526553	ACSS1	Q9NUB1	689 aa	Predicted RBP	4.6	□□□□□ -1.67
CD44-223	ENST00000526553		A0A087X0M5	115 aa		4.59	□□□□□ -1.67
CD44-223	ENST00000526553		A0A1B0GX30	115 aa		4.59	□□□□□ -1.67
CD44-223	ENST00000526553		A0A1W2PQF6	199 aa		4.59	□□□□□ -1.67
CD44-223	ENST00000526553		A0A1W2PS18	150 aa		4.59	□□□□□ -1.67
CD44-223	ENST00000526553	SPINT2	O43291	252 aa		4.59	□□□□□ -1.67
CD44-223	ENST00000526553	RNASEH2A	O75792	299 aa	Known RBP	4.59	□□□□□ -1.67
CD44-223	ENST00000526553	EGF	P01133	1207 aa		4.59	□□□□□ -1.67
CD44-223	ENST00000526553	IGLV2-11	P01706	119 aa		4.59	□□□□□ -1.67
CD44-223	ENST00000526553	HLA-DOB	P13765	273 aa		4.59	□□□□□ -1.67
CD44-223	ENST00000526553	PSMA4	P25789	261 aa	Known RBP	4.59	□□□□□ -1.67
CD44-223	ENST00000526553	RGS2	P41220	211 aa		4.59	□□□□□ -1.67
CD44-223	ENST00000526553	FUT6	P51993	359 aa		4.59	□□□□□ -1.67
CD44-223	ENST00000526553	CLNS1A	P54105	237 aa	Known RBP	4.59	□□□□□ -1.67
CD44-223	ENST00000526553	HYAL1	Q12794	435 aa		4.59	□□□□□ -1.67
CD44-223	ENST00000526553	DCTN2	Q13561	401 aa	Known RBP	4.59	□□□□□ -1.67
CD44-223	ENST00000526553	TST	Q16762	297 aa	Known RBP	4.59	□□□□□ -1.67
CD44-223	ENST00000526553	CFAP161	Q6P656	301 aa		4.59	□□□□□ -1.67
CD44-223	ENST00000526553	BRAT1	Q6PJG6	821 aa		4.59	□□□□□ -1.67
CD44-223	ENST00000526553	SMIM29	Q86T20	159 aa		4.59	□□□□□ -1.67
CD44-223	ENST00000526553	TBC1D1	Q86TI0	1168 aa	Predicted RBP	4.59	□□□□□ -1.67
CD44-223	ENST00000526553	CCDC13	Q8IYE1	715 aa		4.59	□□□□□ -1.67
CD44-223	ENST00000526553	ZNF34	Q8IZ26	560 aa		4.59	□□□□□ -1.67
CD44-223	ENST00000526553	RNF113B	Q8IZP6	322 aa	Known RBP	4.59	□□□□□ -1.67
CD44-223	ENST00000526553	BEST3	Q8N1M1	668 aa		4.59	□□□□□ -1.67
CD44-223	ENST00000526553	MAB21L3	Q8N8X9	362 aa		4.59	□□□□□ -1.67
CD44-223	ENST00000526553	TMEM116	Q8NCL8	245 aa		4.59	□□□□□ -1.67
CD44-223	ENST00000526553	DUSP19	Q8WTR2	217 aa		4.59	□□□□□ -1.67
CD44-223	ENST00000526553	SLC20A1	Q8WUM9	679 aa		4.59	□□□□□ -1.67
CD44-223	ENST00000526553	TAAR8	Q969N4	342 aa		4.59	□□□□□ -1.67
CD44-223	ENST00000526553	ORAI1	Q96D31	301 aa		4.59	□□□□□ -1.67
CD44-223	ENST00000526553	MTERF1	Q99551	399 aa	Known RBP	4.59	□□□□□ -1.67
CD44-223	ENST00000526553	OLA1	Q9NTK5	396 aa	Known RBP	4.59	□□□□□ -1.67
CD44-223	ENST00000526553	TXLNG	Q9NUQ3	528 aa		4.59	□□□□□ -1.67
CD44-223	ENST00000526553	ACSL5	Q9ULC5	683 aa		4.59	□□□□□ -1.67
CD44-223	ENST00000526553	PADI1	Q9ULC6	663 aa		4.59	□□□□□ -1.67
CD44-223	ENST00000526553	MAU2	Q9Y6X3	613 aa		4.59	□□□□□ -1.67
CD44-223	ENST00000526553		A0A087WYN8	130 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	CAMTA2	O94983	1202 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	NKX2-2	O95096	273 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	CCNDBP1	O95273	360 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	IPO7	O95373	1038 aa	Known RBP	4.58	□□□□□ -1.68
CD44-223	ENST00000526553	IGKV3-20	P01619	116 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	UMOD	P07911	640 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	SPARC	P09486	303 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	CDH1	P12830	882 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	IL7R	P16871	459 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	UBA1	P22314	1058 aa	Known RBP	4.58	□□□□□ -1.68
CD44-223	ENST00000526553	CORO1A	P31146	461 aa	Known RBP	4.58	□□□□□ -1.68
CD44-223	ENST00000526553	IL15	P40933	162 aa	Predicted RBP	4.58	□□□□□ -1.68
CD44-223	ENST00000526553	F2RL1	P55085	397 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	TAS2R38	P59533	333 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	PDE1B	Q01064	536 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	ACSM2A	Q08AH3	577 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	ARL16	Q0P5N6	197 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	GRIK2	Q13002	908 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	PRKG2	Q13237	762 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	FRG1	Q14331	258 aa	Known RBP	4.58	□□□□□ -1.68
CD44-223	ENST00000526553	TBCE	Q15813	527 aa	Predicted RBP	4.58	□□□□□ -1.68
CD44-223	ENST00000526553	DECR1	Q16698	335 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	ACCSL	Q4AC99	568 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	CDON	Q4KMG0	1287 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	DCST1	Q5T197	706 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	ZNF280D	Q6N043	979 aa		4.58	□□□□□ -1.68

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