RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 ACVR1CQ8NER5 493 aa3.91□□□□□ -1.78
CD44-217ENST00000525348 THOC2Q8NI27 1593 aaKnown RBP3.91□□□□□ -1.78
CD44-217ENST00000525348 MAGEC3Q8TD91 643 aa3.91□□□□□ -1.78
CD44-217ENST00000525348 GTF3C6Q969F1 213 aa3.91□□□□□ -1.78
CD44-217ENST00000525348 HES6Q96HZ4 224 aa3.91□□□□□ -1.78
CD44-217ENST00000525348 MTERF1Q99551 399 aaKnown RBP3.91□□□□□ -1.78
CD44-217ENST00000525348 EIF2AK1Q9BQI3 630 aaKnown RBP3.91□□□□□ -1.78
CD44-217ENST00000525348 MYH16Q9H6N6 1097 aa3.91□□□□□ -1.78
CD44-217ENST00000525348 SCPEP1Q9HB40 452 aa3.91□□□□□ -1.78
CD44-217ENST00000525348 ASAH2Q9NR71 780 aa3.91□□□□□ -1.78
CD44-217ENST00000525348 AMDHD2Q9Y303 409 aa3.91□□□□□ -1.78
CD44-217ENST00000525348 AAR2Q9Y312 384 aaKnown RBP3.91□□□□□ -1.78
CD44-217ENST00000525348 OR2W1Q9Y3N9 320 aa3.91□□□□□ -1.78
CD44-217ENST00000525348 LOXL2Q9Y4K0 774 aa3.91□□□□□ -1.78
CD44-217ENST00000525348 ASPDHA6ND91 283 aa3.9□□□□□ -1.79
CD44-217ENST00000525348 NPIPB15A6NHN6 443 aaPredicted RBP3.9□□□□□ -1.79
CD44-217ENST00000525348 LILRA5A6NI73 299 aa3.9□□□□□ -1.79
CD44-217ENST00000525348 AGR2O95994 175 aa3.9□□□□□ -1.79
CD44-217ENST00000525348 EGFP01133 1207 aa3.9□□□□□ -1.79
CD44-217ENST00000525348 ATP1A3P13637 1013 aa3.9□□□□□ -1.79
CD44-217ENST00000525348 IL7RP16871 459 aa3.9□□□□□ -1.79
CD44-217ENST00000525348 RRM1P23921 792 aa3.9□□□□□ -1.79
CD44-217ENST00000525348 DRAP1Q14919 205 aaPredicted RBP3.9□□□□□ -1.79
CD44-217ENST00000525348 RALBP1Q15311 655 aa3.9□□□□□ -1.79
CD44-217ENST00000525348 GSTA3Q16772 222 aa3.9□□□□□ -1.79
CD44-217ENST00000525348 C6orf141Q5SZD1 244 aa3.9□□□□□ -1.79
CD44-217ENST00000525348 ZNF449Q6P9G9 518 aa3.9□□□□□ -1.79
CD44-217ENST00000525348 GSG1LQ6UXU4 331 aa3.9□□□□□ -1.79
CD44-217ENST00000525348 DPPA4Q7L190 304 aa3.9□□□□□ -1.79
CD44-217ENST00000525348 ANKRD23Q86SG2 305 aa3.9□□□□□ -1.79
CD44-217ENST00000525348 KMT5CQ86Y97 462 aa3.9□□□□□ -1.79
CD44-217ENST00000525348 NRROSQ86YC3 692 aa3.9□□□□□ -1.79
CD44-217ENST00000525348 OR13A1Q8NGR1 328 aa3.9□□□□□ -1.79
CD44-217ENST00000525348 OR5R1Q8NH85 324 aa3.9□□□□□ -1.79
CD44-217ENST00000525348 IGSF8Q969P0 613 aa3.9□□□□□ -1.79
CD44-217ENST00000525348 ORAI1Q96D31 301 aa3.9□□□□□ -1.79
CD44-217ENST00000525348 UHRF2Q96PU4 802 aa3.9□□□□□ -1.79
CD44-217ENST00000525348 PIP5K1AQ99755 562 aa3.9□□□□□ -1.79
CD44-217ENST00000525348 TMEM47Q9BQJ4 181 aa3.9□□□□□ -1.79
CD44-217ENST00000525348 FBRSL1Q9HCM7 1045 aaKnown RBP3.9□□□□□ -1.79
CD44-217ENST00000525348 UBN1Q9NPG3 1134 aa3.9□□□□□ -1.79
CD44-217ENST00000525348 ABCF3Q9NUQ8 709 aa3.9□□□□□ -1.79
CD44-217ENST00000525348 KIF21AQ7Z4S6 1674 aa3.9□□□□□ -1.79
CD44-217ENST00000525348 BAZ1AQ9NRL2 1556 aaPredicted RBP3.89□□□□□ -1.79
CD44-217ENST00000525348 RIMBP3CA6NJZ7 1639 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 RIMBP3BA6NNM3 1639 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 RIMBP3Q9UFD9 1639 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 FAM237AA0A1B0GTK4 181 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 A0A1B0GVC2 190 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 A0A1W2PS18 150 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 CYSRT1A8MQ03 144 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 CCER2I3L3R5 266 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 ZNF500O60304 480 aaPredicted RBP3.89□□□□□ -1.79
CD44-217ENST00000525348 SOCS5O75159 536 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 CETPP11597 493 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 RGS2P41220 211 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 GLIPR1P48060 266 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 EIF3BP55884 814 aaKnown RBP3.89□□□□□ -1.79
CD44-217ENST00000525348 TAS2R38P59533 333 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 CSNK2A1P68400 391 aaPredicted RBP3.89□□□□□ -1.79
CD44-217ENST00000525348 RUNX1T1Q06455 604 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 RBM39Q14498 530 aaKnown RBP3.89□□□□□ -1.79
CD44-217ENST00000525348 HSP90AB3PQ58FF7 597 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 IRAK1BP1Q5VVH5 260 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 CDC73Q6P1J9 531 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 BRAT1Q6PJG6 821 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 RAD9BQ6WBX8 426 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 ASB18Q6ZVZ8 466 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 RNF113BQ8IZP6 322 aaKnown RBP3.89□□□□□ -1.79
CD44-217ENST00000525348 SRBD1Q8N5C6 995 aaKnown RBP3.89□□□□□ -1.79
CD44-217ENST00000525348 KCNH5Q8NCM2 988 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 CSNK2A3Q8NEV1 391 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 LRRC8CQ8TDW0 803 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 SAAL1Q96ER3 474 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 ALG14Q96F25 216 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 CDCA5Q96FF9 252 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 PERPQ96FX8 193 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 ACOX2Q99424 681 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 EPYCQ99645 322 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 TRMT61BQ9BVS5 477 aaKnown RBP3.89□□□□□ -1.79
CD44-217ENST00000525348 YY1AP1Q9H869 796 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 ACSS1Q9NUB1 689 aaPredicted RBP3.89□□□□□ -1.79
CD44-217ENST00000525348 C9orf78Q9NZ63 289 aaPredicted RBP3.89□□□□□ -1.79
CD44-217ENST00000525348 ERRFI1Q9UJM3 462 aaPredicted RBP3.89□□□□□ -1.79
CD44-217ENST00000525348 HAO1Q9UJM8 370 aa3.89□□□□□ -1.79
CD44-217ENST00000525348 A0A1W2PQF6 199 aa3.88□□□□□ -1.79
CD44-217ENST00000525348 SLC22A3O75751 556 aa3.88□□□□□ -1.79
CD44-217ENST00000525348 PAK4O96013 591 aaPredicted RBP3.88□□□□□ -1.79
CD44-217ENST00000525348 HSP90AA1P07900 732 aaKnown RBP3.88□□□□□ -1.79
CD44-217ENST00000525348 CFC1BP0CG36 223 aa3.88□□□□□ -1.79
CD44-217ENST00000525348 CFC1P0CG37 223 aa3.88□□□□□ -1.79
CD44-217ENST00000525348 CD53P19397 219 aa3.88□□□□□ -1.79
CD44-217ENST00000525348 TIMP3P35625 211 aa3.88□□□□□ -1.79
CD44-217ENST00000525348 ARL1P40616 181 aaPredicted RBP3.88□□□□□ -1.79
CD44-217ENST00000525348 USP8P40818 1118 aa3.88□□□□□ -1.79
CD44-217ENST00000525348 LINC01547P58512 204 aaPredicted RBP3.88□□□□□ -1.79
CD44-217ENST00000525348 PDE1BQ01064 536 aa3.88□□□□□ -1.79
CD44-217ENST00000525348 CEBPZQ03701 1054 aaKnown RBP3.88□□□□□ -1.79
CD44-217ENST00000525348 TBX2Q13207 712 aaPredicted RBP3.88□□□□□ -1.79
CD44-217ENST00000525348 CDONQ4KMG0 1287 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms