RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 HID1Q8IV36 788 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 CDKL3Q8IVW4 592 aaPredicted RBP9.66□□□□□ -0.86
RNF4-221ENST00000513643 GALNT15Q8N3T1 639 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 DCBLD1Q8N8Z6 715 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 PDLIM2Q96JY6 352 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 SPATA13Q96N96 652 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 FAM118BQ9BPY3 351 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 C19orf43Q9BQ61 176 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 RIOK2Q9BVS4 552 aaKnown RBP9.66□□□□□ -0.86
RNF4-221ENST00000513643 TLR10Q9BXR5 811 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 TMEM168Q9H0V1 697 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 CARD9Q9H257 536 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 TRABDQ9H4I3 376 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 PHPT1Q9NRX4 125 aaPredicted RBP9.66□□□□□ -0.86
RNF4-221ENST00000513643 UBP1Q9NZI7 540 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 IL17CQ9P0M4 197 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 KLHL8Q9P2G9 620 aaPredicted RBP9.66□□□□□ -0.86
RNF4-221ENST00000513643 DKK4Q9UBT3 224 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 CD84Q9UIB8 345 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 TMPRSS11EQ9UL52 423 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 ZNF711Q9Y462 761 aa9.66□□□□□ -0.86
RNF4-221ENST00000513643 ARHGEF17Q96PE2 2063 aaPredicted RBP9.65□□□□□ -0.86
RNF4-221ENST00000513643 PRR19A6NJB7 356 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 OPA1O60313 960 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 NOBOXO60393 691 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 DNAJC6O75061 913 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 ANXA9O76027 345 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 ANXA6P08133 673 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 PIRTP0C851 137 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 BPIP17213 487 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 HLA-DPA1P20036 260 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 PSMA3P25788 255 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 CHRNA4P43681 627 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 GPR1P46091 355 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 POLD2P49005 469 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 DUSP3P51452 185 aaPredicted RBP9.65□□□□□ -0.86
RNF4-221ENST00000513643 PYCR3Q53H96 274 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 PDPK2PQ6A1A2 396 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 RAET1GQ6H3X3 334 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 UNQ6494/PRO21346Q6UXR6 183 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 KDELC2Q7Z4H8 507 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 GKN2Q86XP6 184 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 SLC13A5Q86YT5 568 aaPredicted RBP9.65□□□□□ -0.86
RNF4-221ENST00000513643 TRAM1L1Q8N609 369 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 PAF1Q8N7H5 531 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 ARL10Q8N8L6 244 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 CCL4L1Q8NHW4 92 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 CCHCR1Q8TD31 782 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 HIC2Q96JB3 615 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 PLEKHG4BQ96PX9 1271 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 FRMD8P1Q9BZ68 369 aaPredicted RBP9.65□□□□□ -0.86
RNF4-221ENST00000513643 RAD18Q9NS91 495 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 PKD2L2Q9NZM6 624 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 VPS18Q9P253 973 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 SUFUQ9UMX1 484 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 SHOC2Q9UQ13 582 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 PPP2R2CQ9Y2T4 447 aa9.65□□□□□ -0.86
RNF4-221ENST00000513643 PCYT1BQ9Y5K3 369 aaPredicted RBP9.65□□□□□ -0.86
RNF4-221ENST00000513643 OAS3Q9Y6K5 1087 aaKnown RBP9.65□□□□□ -0.86
RNF4-221ENST00000513643 GOLGA6L3A6NEY3 463 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 TAF4O00268 1085 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 NTN3O00634 580 aaPredicted RBP9.64□□□□□ -0.87
RNF4-221ENST00000513643 GAPDHSO14556 408 aaPredicted RBP9.64□□□□□ -0.87
RNF4-221ENST00000513643 CHUKO15111 745 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 KCNN4O15554 427 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 LIASO43766 372 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 METTL18O95568 372 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 AGTP01019 485 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 FGF1P05230 155 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 PSMB4P28070 264 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 STIP1P31948 543 aaKnown RBP9.64□□□□□ -0.87
RNF4-221ENST00000513643 ADCY8P40145 1251 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 GEMP55040 296 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 GDF10P55107 478 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 CLDN6P56747 220 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 HLTFQ14527 1009 aaKnown RBP eCLIP9.64□□□□□ -0.87
RNF4-221ENST00000513643 RPS6KA1Q15418 735 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 NR0B2Q15466 257 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 PCSK7Q16549 785 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 PARP6Q2NL67 630 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 PERM1Q5SV97 790 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 ITPRIPL1Q6GPH6 555 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 GUSBP11Q6P575 273 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 DRICH1Q6PGQ1 229 aaPredicted RBP9.64□□□□□ -0.87
RNF4-221ENST00000513643 DARS2Q6PI48 645 aaKnown RBP9.64□□□□□ -0.87
RNF4-221ENST00000513643 RD3Q7Z3Z2 195 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 MARCH9Q86YJ5 346 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 REXO1L1PQ8IX06 675 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 FAM71DQ8N9W8 422 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 TRIM58Q8NG06 486 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 CCDC110Q8TBZ0 833 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 VPS35Q96QK1 796 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 ZSCAN5AQ9BUG6 496 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 KCNF1Q9H3M0 494 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 RMI1Q9H9A7 625 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 CYP4F12Q9HCS2 524 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 IL26Q9NPH9 171 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 LZTFL1Q9NQ48 299 aa9.64□□□□□ -0.87
RNF4-221ENST00000513643 SPATS2LQ9NUQ6 558 aaKnown RBP9.64□□□□□ -0.87
RNF4-221ENST00000513643 HACD3Q9P035 362 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms