RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 C11orf65Q8NCR3 313 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 SNX33Q8WV41 574 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 GATAD2BQ8WXI9 593 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 MASTLQ96GX5 879 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 TSNAXQ99598 290 aaKnown RBP11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 MIPEPQ99797 713 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 RHOJQ9H4E5 214 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 MAGI2Q86UL8 1455 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 C5orf60A6NFR6 353 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 AKAP3O75969 853 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 PORP16435 677 aaPredicted RBP11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 GPAT3Q53EU6 434 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 SLC47A2Q86VL8 602 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 OXR1Q8N573 874 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 SLC37A3Q8NCC5 494 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 OR2L2Q8NH16 312 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 ARL5BQ96KC2 179 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 TRPV4Q9HBA0 871 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 GPATCH2LQ9NWQ4 482 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 KDM5CP41229 1560 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 C5orf51A6NDU8 294 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 CCNDBP1O95273 360 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 SHBGP04278 402 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 RAP2AP10114 183 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 ARL3P36405 182 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 MBTD1Q05BQ5 628 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 ZNF267Q14586 743 aaPredicted RBP11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 GRK1Q15835 563 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 CDKL4Q5MAI5 379 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 RNASEH2BQ5TBB1 312 aaKnown RBP11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 FBXL16Q8N461 479 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 OR7G2Q8NG99 324 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 POF1BQ8WVV4 589 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 NXPE2Q96DL1 559 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 TBATAQ96M53 351 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 NMUR2Q9GZQ4 415 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 CHST7Q9NS84 486 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 QPCTLQ9NXS2 382 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 CARNS1A5YM72 827 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 C1orf196B1AJZ1 125 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 DLGAP1O14490 977 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 IL32P24001 234 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 DNASE1L1P49184 302 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 APLP1P51693 650 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 MARSP56192 900 aaKnown RBP11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 CYP4F8P98187 520 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 ZNF181Q2M3W8 571 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 LDLRAP1Q5SW96 308 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 ISLR2Q6UXK2 745 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 C16orf86Q6ZW13 317 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 CYP4V2Q6ZWL3 525 aaPredicted RBP11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 CCDC71Q8IV32 467 aaPredicted RBP11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 SLC44A3Q8N4M1 653 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 ZNF433Q8N7K0 673 aaPredicted RBP11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 HSPA12BQ96MM6 686 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 ZNF670Q9BS34 389 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 FBXO6Q9NRD1 293 aaPredicted RBP11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 ARHGEF40Q8TER5 1519 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 BORCS7-ASMTA0A0B4J1R7 106 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 C9IYK1 514 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 DCLK1O15075 740 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 ARL6IP5O75915 188 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 PGLSO95336 258 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 PAPSS2O95340 614 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 IGKV5-2P06315 115 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 SRCP12931 536 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 IFI30P13284 250 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 AGTR1P30556 359 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 OR3A3P47888 321 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 OR3A2P47893 321 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 GJA9P57773 515 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 SLC6A3Q01959 620 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 CRTC2Q53ET0 693 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 PITRM1Q5JRX3 1037 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 ARMC12Q5T9G4 340 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 KLHDC10Q6PID8 442 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 RNF44Q7L0R7 432 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 ADGRD2Q7Z7M1 963 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 ALYREFQ86V81 257 aaKnown RBP11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 C4orf19Q8IY42 314 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 ADGRF2Q8IZF7 708 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 CSGALNACT1Q8TDX6 532 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 TAS1R2Q8TE23 839 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 DNAJC1Q96KC8 554 aaKnown RBP11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 GPER1Q99527 375 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 LPIN3Q9BQK8 851 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 TCF7L1Q9HCS4 588 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 AAASQ9NRG9 546 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 DNMT1P26358 1616 aaKnown RBP11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 SAMD9LQ8IVG5 1584 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 SIGLEC16A6NMB1 481 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 CYP27B1O15528 508 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 SULT1B1O43704 296 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 OR7A10O76100 309 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 CTDNEP1O95476 244 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 IFNA10P01566 189 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 HMGN1P05114 100 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 CD36P16671 472 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 EPHA3P29320 983 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 UGT2B10P36537 528 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms