RNA–Protein interactions for RNA: ENST00000504181.1

LSM6-204, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM6, Length 549 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-204ENST00000504181 KLC2Q9H0B6 622 aa12.41□□□□□ -0.42
LSM6-204ENST00000504181 GSX1Q9H4S2 264 aaPredicted RBP12.41□□□□□ -0.42
LSM6-204ENST00000504181 ACP6Q9NPH0 428 aa12.41□□□□□ -0.42
LSM6-204ENST00000504181 OGFRQ9NZT2 677 aa12.41□□□□□ -0.42
LSM6-204ENST00000504181 TMEM63CQ9P1W3 806 aa12.41□□□□□ -0.42
LSM6-204ENST00000504181 PPARGC1AQ9UBK2 798 aaKnown RBP12.41□□□□□ -0.42
LSM6-204ENST00000504181 AJAP1Q9UKB5 411 aaPredicted RBP12.41□□□□□ -0.42
LSM6-204ENST00000504181 SNX7Q9UNH6 387 aa12.41□□□□□ -0.42
LSM6-204ENST00000504181 SLC17A4Q9Y2C5 497 aa12.41□□□□□ -0.42
LSM6-204ENST00000504181 NEU2Q9Y3R4 380 aa12.41□□□□□ -0.42
LSM6-204ENST00000504181 ANKRD12Q6UB98 2062 aa12.41□□□□□ -0.42
LSM6-204ENST00000504181 TMEM200CA6NKL6 621 aa12.4□□□□□ -0.42
LSM6-204ENST00000504181 KCNN4O15554 427 aa12.4□□□□□ -0.42
LSM6-204ENST00000504181 ACTN4O43707 911 aaKnown RBP12.4□□□□□ -0.42
LSM6-204ENST00000504181 KIF1CO43896 1103 aaKnown RBP12.4□□□□□ -0.42
LSM6-204ENST00000504181 RAMP2O60895 175 aa12.4□□□□□ -0.42
LSM6-204ENST00000504181 ERBB2P04626 1255 aa12.4□□□□□ -0.42
LSM6-204ENST00000504181 TYRP1P17643 537 aa12.4□□□□□ -0.42
LSM6-204ENST00000504181 GNA15P30679 374 aa12.4□□□□□ -0.42
LSM6-204ENST00000504181 MAPKAPK2P49137 400 aa12.4□□□□□ -0.42
LSM6-204ENST00000504181 VAV2P52735 878 aa12.4□□□□□ -0.42
LSM6-204ENST00000504181 RRADP55042 308 aa12.4□□□□□ -0.42
LSM6-204ENST00000504181 SLC6A3Q01959 620 aa12.4□□□□□ -0.42
LSM6-204ENST00000504181 SRSF11Q05519 484 aaKnown RBP12.4□□□□□ -0.42
LSM6-204ENST00000504181 ATP1A4Q13733 1029 aa12.4□□□□□ -0.42
LSM6-204ENST00000504181 ZNF235Q14590 738 aa12.4□□□□□ -0.42
LSM6-204ENST00000504181 RABEP1Q15276 862 aa12.4□□□□□ -0.42
LSM6-204ENST00000504181 AFMIDQ63HM1 303 aa12.4□□□□□ -0.42
LSM6-204ENST00000504181 DENND2CQ68D51 928 aa12.4□□□□□ -0.42
LSM6-204ENST00000504181 DPPA4Q7L190 304 aa12.4□□□□□ -0.42
LSM6-204ENST00000504181 MRGPRGQ86SM5 289 aa12.4□□□□□ -0.42
LSM6-204ENST00000504181 WDTC1Q8N5D0 677 aa12.4□□□□□ -0.42
LSM6-204ENST00000504181 PAF1Q8N7H5 531 aa12.4□□□□□ -0.42
LSM6-204ENST00000504181 MR1Q95460 341 aa12.4□□□□□ -0.42
LSM6-204ENST00000504181 SGSM3Q96HU1 749 aa12.4□□□□□ -0.42
LSM6-204ENST00000504181 MDFIQ99750 246 aa12.4□□□□□ -0.42
LSM6-204ENST00000504181 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.4□□□□□ -0.42
LSM6-204ENST00000504181 EPB41L1Q9H4G0 881 aa12.4□□□□□ -0.42
LSM6-204ENST00000504181 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.4□□□□□ -0.42
LSM6-204ENST00000504181 CNOT8Q9UFF9 292 aaKnown RBP12.4□□□□□ -0.42
LSM6-204ENST00000504181 STAP1Q9ULZ2 295 aa12.4□□□□□ -0.42
LSM6-204ENST00000504181 TMEM98Q9Y2Y6 226 aa12.4□□□□□ -0.42
LSM6-204ENST00000504181 SYT1P21579 422 aa12.39□□□□□ -0.43
LSM6-204ENST00000504181 CA5AP35218 305 aa12.39□□□□□ -0.43
LSM6-204ENST00000504181 FMO5P49326 533 aa12.39□□□□□ -0.43
LSM6-204ENST00000504181 PDE1BQ01064 536 aa12.39□□□□□ -0.43
LSM6-204ENST00000504181 TLE4Q04727 773 aa12.39□□□□□ -0.43
LSM6-204ENST00000504181 GRM3Q14832 879 aa12.39□□□□□ -0.43
LSM6-204ENST00000504181 PYCR3Q53H96 274 aa12.39□□□□□ -0.43
LSM6-204ENST00000504181 INO80DQ53TQ3 878 aaPredicted RBP12.39□□□□□ -0.43
LSM6-204ENST00000504181 RAET1GQ6H3X3 334 aa12.39□□□□□ -0.43
LSM6-204ENST00000504181 DUS1LQ6P1R4 473 aaKnown RBP12.39□□□□□ -0.43
LSM6-204ENST00000504181 Q6ZS92 163 aa12.39□□□□□ -0.43
LSM6-204ENST00000504181 TAOK1Q7L7X3 1001 aa12.39□□□□□ -0.43
LSM6-204ENST00000504181 SLC9B2Q86UD5 537 aa12.39□□□□□ -0.43
LSM6-204ENST00000504181 NLRP14Q86W24 1093 aa12.39□□□□□ -0.43
LSM6-204ENST00000504181 FAM131BQ86XD5 332 aa12.39□□□□□ -0.43
LSM6-204ENST00000504181 CBARPQ8N350 705 aaPredicted RBP12.39□□□□□ -0.43
LSM6-204ENST00000504181 ZADH2Q8N4Q0 377 aa12.39□□□□□ -0.43
LSM6-204ENST00000504181 ENDOVQ8N8Q3 282 aaKnown RBP12.39□□□□□ -0.43
LSM6-204ENST00000504181 CASKIN2Q8WXE0 1202 aa12.39□□□□□ -0.43
LSM6-204ENST00000504181 SLC35C1Q96A29 364 aa12.39□□□□□ -0.43
LSM6-204ENST00000504181 PGAP3Q96FM1 320 aaPredicted RBP12.39□□□□□ -0.43
LSM6-204ENST00000504181 CCDC120Q96HB5 630 aa12.39□□□□□ -0.43
LSM6-204ENST00000504181 COQ10AQ96MF6 247 aa12.39□□□□□ -0.43
LSM6-204ENST00000504181 KREMEN1Q96MU8 473 aa12.39□□□□□ -0.43
LSM6-204ENST00000504181 ZNF641Q96N77 438 aaPredicted RBP12.39□□□□□ -0.43
LSM6-204ENST00000504181 TRAPPC9Q96Q05 1148 aa12.39□□□□□ -0.43
LSM6-204ENST00000504181 GTPBP4Q9BZE4 634 aaKnown RBP12.39□□□□□ -0.43
LSM6-204ENST00000504181 PDE7BQ9NP56 450 aa12.39□□□□□ -0.43
LSM6-204ENST00000504181 FGF21Q9NSA1 209 aa12.39□□□□□ -0.43
LSM6-204ENST00000504181 TMEM248Q9NWD8 314 aa12.39□□□□□ -0.43
LSM6-204ENST00000504181 TBC1D29Q9UFV1 150 aa12.39□□□□□ -0.43
LSM6-204ENST00000504181 RARRES3Q9UL19 164 aa12.39□□□□□ -0.43
LSM6-204ENST00000504181 SEC16AO15027 2179 aa12.39□□□□□ -0.43
LSM6-204ENST00000504181 VPS13CQ709C8 3753 aa12.39□□□□□ -0.43
LSM6-204ENST00000504181 C19orf84I3L1E1 186 aa12.38□□□□□ -0.43
LSM6-204ENST00000504181 TOX3O15405 576 aaPredicted RBP12.38□□□□□ -0.43
LSM6-204ENST00000504181 RHOQP17081 205 aa12.38□□□□□ -0.43
LSM6-204ENST00000504181 TUBB3Q13509 450 aa12.38□□□□□ -0.43
LSM6-204ENST00000504181 CYTH1Q15438 398 aa12.38□□□□□ -0.43
LSM6-204ENST00000504181 CACHD1Q5VU97 1274 aa12.38□□□□□ -0.43
LSM6-204ENST00000504181 RESP18Q5W5W9 173 aa12.38□□□□□ -0.43
LSM6-204ENST00000504181 IYDQ6PHW0 289 aa12.38□□□□□ -0.43
LSM6-204ENST00000504181 IGFL3Q6UXB1 125 aa12.38□□□□□ -0.43
LSM6-204ENST00000504181 TRIM74Q86UV6 250 aa12.38□□□□□ -0.43
LSM6-204ENST00000504181 GALNT13Q8IUC8 556 aa12.38□□□□□ -0.43
LSM6-204ENST00000504181 ZNF808Q8N4W9 903 aaPredicted RBP12.38□□□□□ -0.43
LSM6-204ENST00000504181 ZBTB2Q8N680 514 aa12.38□□□□□ -0.43
LSM6-204ENST00000504181 CHTF18Q8WVB6 975 aa12.38□□□□□ -0.43
LSM6-204ENST00000504181 FAR1Q8WVX9 515 aa12.38□□□□□ -0.43
LSM6-204ENST00000504181 NT5C3BQ969T7 300 aa12.38□□□□□ -0.43
LSM6-204ENST00000504181 RELTQ969Z4 430 aa12.38□□□□□ -0.43
LSM6-204ENST00000504181 SCARF2Q96GP6 870 aaPredicted RBP12.38□□□□□ -0.43
LSM6-204ENST00000504181 ZBTB20Q9HC78 741 aaPredicted RBP12.38□□□□□ -0.43
LSM6-204ENST00000504181 SUCOQ9UBS9 1254 aaKnown RBP12.38□□□□□ -0.43
LSM6-204ENST00000504181 CSAG2Q9Y5P2 127 aa12.38□□□□□ -0.43
LSM6-204ENST00000504181 LILRA5A6NI73 299 aa12.37□□□□□ -0.43
LSM6-204ENST00000504181 GRID2O43424 1007 aa12.37□□□□□ -0.43
LSM6-204ENST00000504181 SNX2O60749 519 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms