RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 EGFL7Q9UHF1 273 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 PADI4Q9UM07 663 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 CLCA2Q9UQC9 943 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 SCML2Q9UQR0 700 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 COL24A1Q17RW2 1714 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 DPPA5A6NC42 116 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 OAS1P00973 400 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 IMPDH1P20839 514 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 PEX2P28328 305 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 PPM1AP35813 382 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 DPY19L2P1Q6NXN4 242 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 CIR1Q86X95 450 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 TTC30BQ8N4P2 665 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 COPS8Q99627 209 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 RIBC2Q9H4K1 309 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 NOL11Q9H8H0 719 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 H2AFY2Q9P0M6 372 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 NKX1-2Q9UD57 310 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 PNMA8BQ9ULN7 279 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 DNAJC25-GNG10A0A024R161 153 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 GLYATL1P3A0A0U1RQE8 302 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 DNAJA2O60884 412 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 ABCB1P08183 1280 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 HERVK_113P63132 956 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 TIGD2Q4W5G0 525 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 BROXQ5VW32 411 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 DET1Q7L5Y6 550 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 ZBTB2Q8N680 514 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 ENDOVQ8N8Q3 282 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 RORBQ92753 470 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 ERVK-6Q9BXR3 956 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 EXOSC4Q9NPD3 245 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 ATAD3AQ9NVI7 634 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 GNEQ9Y223 722 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 TRIM17Q9Y577 477 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 PARNO95453 639 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 CCL23P55773 120 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 MTX3Q5HYI7 312 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 STEAP4Q687X5 459 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 MSANTD2Q6P1R3 559 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 ISLR2Q6UXK2 745 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 DSG4Q86SJ6 1040 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 IFNL1Q8IU54 200 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 CROCCP3Q8IVE0 287 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 DGCR14Q96DF8 476 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 REEP1Q9H902 201 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 KRCC1Q9NPI7 259 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 TRMT13Q9NUP7 481 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 SELENONQ9NZV5 590 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 RSL24D1Q9UHA3 163 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 C3orf18Q9UK00 162 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 HS3ST4Q9Y661 456 aa10.73□□□□□ -0.69
LIMCH1-205ENST00000503057 CNOT3O75175 753 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 TIPRLO75663 272 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 UMPSP11172 480 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 TRAP1Q12931 704 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 ADGRE1Q14246 886 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 MPPE1Q53F39 396 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 REM2Q8IYK8 340 aaPredicted RBP10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 OR7D4Q8NG98 312 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 GRIN3AQ8TCU5 1115 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 UPF1Q92900 1129 aaKnown RBP eCLIP10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 KCTD5Q9NXV2 234 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 HNRNPCL2B2RXH8 293 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 CCL22O00626 93 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 IL1BP01584 269 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 SERPINB1P30740 379 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 VPS26BQ4G0F5 336 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 GCNT7Q6ZNI0 430 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 UBE2E3Q969T4 207 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 OTULINQ96BN8 352 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 TSGA13Q96PP4 275 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 SEZ6LQ9BYH1 1024 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 MOCS1Q9NZB8 636 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 CACNG4Q9UBN1 327 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 TBX10O75333 385 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 AHSGP02765 367 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 ESR1P03372 595 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 FGF3P11487 239 aaPredicted RBP10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 AP1S1P61966 158 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 PFKPQ01813 784 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 MAB21L3Q8N8X9 362 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 PPP1R16AQ96I34 528 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 C8orf48Q96LL4 319 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 UBXN8O00124 270 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 SCAMP3O14828 347 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 PIP5K1BO14986 540 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 DCLK1O15075 740 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 SGTAO43765 313 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 SLC25A14O95258 325 aaPredicted RBP10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 CST1P01037 141 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 PSMB9P28065 219 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 SPAM1P38567 509 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 PTGER3P43115 390 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 RPL26P61254 145 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 SULT2A1Q06520 285 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 SLC10A2Q12908 348 aaPredicted RBP10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 DCTN2Q13561 401 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 CYP2A13Q16696 494 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 NECAB2Q7Z6G3 386 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms