RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 OR4K2Q8NGD2 314 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 SPDL1Q96EA4 605 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 TMA16Q96EY4 203 aaKnown RBP11.93□□□□□ -0.5
NUP54-202ENST00000502850 IGSF21Q96ID5 467 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 MARK4Q96L34 752 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 HERC2P3Q9BVR0 1158 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 C1QTNF3Q9BXJ4 246 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 FAM192AQ9GZU8 254 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 SPAG4Q9NPE6 437 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 POLR3BQ9NW08 1133 aaPredicted RBP11.93□□□□□ -0.5
NUP54-202ENST00000502850 CACNA2D2Q9NY47 1150 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 TRMT6Q9UJA5 497 aaKnown RBP11.93□□□□□ -0.5
NUP54-202ENST00000502850 YIPF1Q9Y548 306 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 KIAA1671Q9BY89 1806 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 SUPT3HB4E1H0 165 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 ANKRD66B4E2M5 251 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 GIPC1O14908 333 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 STX7O15400 261 aaKnown RBP11.93□□□□□ -0.5
NUP54-202ENST00000502850 NRP2O60462 931 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 SUPT3HO75486 399 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 CRCPO75575 148 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 MLYCDO95822 493 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 ESR1P03372 595 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 PKMP14618 531 aaKnown RBP11.93□□□□□ -0.5
NUP54-202ENST00000502850 XRCC1P18887 633 aaPredicted RBP11.93□□□□□ -0.5
NUP54-202ENST00000502850 MAPK8P45983 427 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 AP1S1P61966 158 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 PLD1Q13393 1074 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 CYTH1Q15438 398 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 COQ5Q5HYK3 327 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 IRAK1BP1Q5VVH5 260 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 RNF219Q5W0B1 726 aaPredicted RBP11.93□□□□□ -0.5
NUP54-202ENST00000502850 KANK2Q63ZY3 851 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 GK5Q6ZS86 529 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 METTL3Q86U44 580 aaKnown RBP11.93□□□□□ -0.5
NUP54-202ENST00000502850 CHCHD4Q8N4Q1 142 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 ADCY4Q8NFM4 1077 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 BCL7CQ8WUZ0 217 aaPredicted RBP11.93□□□□□ -0.5
NUP54-202ENST00000502850 TWIST2Q8WVJ9 160 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 KCNJ9Q92806 393 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 EXT2Q93063 718 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 TRAPPC9Q96Q05 1148 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 NPAS2Q99743 824 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 KLF16Q9BXK1 252 aaPredicted RBP11.93□□□□□ -0.5
NUP54-202ENST00000502850 MID1IP1Q9NPA3 183 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 TMEM45AQ9NWC5 275 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 ADA2Q9NZK5 511 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 DLGAP2Q9P1A6 1054 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 PRKAG2Q9UGJ0 569 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 ADAMTS6Q9UKP5 1117 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 ATP11BQ9Y2G3 1177 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 DTNAQ9Y4J8 743 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 PCDHB1Q9Y5F3 818 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 SPO11Q9Y5K1 396 aa11.93□□□□□ -0.5
NUP54-202ENST00000502850 SCN5AQ14524 2016 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 UBXN8O00124 270 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 SOX1O00570 391 aaPredicted RBP11.92□□□□□ -0.5
NUP54-202ENST00000502850 MRASO14807 208 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 GJB3O75712 270 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 TMCC1O94876 653 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 C1RP00736 705 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 PIRTP0C851 137 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 IDO1P14902 403 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 PEX2P28328 305 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 FMO4P31512 558 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 MC4RP32245 332 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 PTGER3P43115 390 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 MRPL19P49406 292 aaKnown RBP11.92□□□□□ -0.5
NUP54-202ENST00000502850 TIAL1Q01085 375 aaKnown RBP eCLIP11.92□□□□□ -0.5
NUP54-202ENST00000502850 CREMQ03060 361 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 GRIK2Q13002 908 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 CEACAM7Q14002 265 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 LRP8Q14114 963 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 ADGRE1Q14246 886 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 OR4D1Q15615 310 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 PFKFB4Q16877 469 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 KIF19Q2TAC6 998 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 MAP7D1Q3KQU3 841 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 GRAMD1BQ3KR37 738 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 NCEH1Q6PIU2 408 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 CERS6Q6ZMG9 384 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 SPATA19Q7Z5L4 167 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 ITIH5Q86UX2 942 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 TDHQ8IZJ6 230 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 ST13P4Q8IZP2 240 aaPredicted RBP11.92□□□□□ -0.5
NUP54-202ENST00000502850 MIER2Q8N344 545 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 BHLHE22Q8NFJ8 381 aaPredicted RBP11.92□□□□□ -0.5
NUP54-202ENST00000502850 TSPEARQ8WU66 669 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 TMEM169Q96HH4 297 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 EFHD1Q9BUP0 239 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 TRIM15Q9C019 465 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 HIPK3Q9H422 1215 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 HCSTQ9UBK5 93 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 CROTQ9UKG9 612 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 NDUFAF1Q9Y375 327 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 PKP3Q9Y446 797 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 MTF2Q9Y483 593 aaPredicted RBP11.92□□□□□ -0.5
NUP54-202ENST00000502850 ANAPC1Q9H1A4 1944 aa11.92□□□□□ -0.5
NUP54-202ENST00000502850 DNAH12Q6ZR08 3092 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms