RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 OSBPL11Q9BXB4 747 aa16.05■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 NOL11Q9H8H0 719 aaKnown RBP16.05■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 HACD3Q9P035 362 aa16.05■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 GMIPQ9P107 970 aa16.05■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 REV3LO60673 3130 aa16.05■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ZNF839A8K0R7 811 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 SYN1P17600 705 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ETFBP38117 255 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 SH3BGRP55822 239 aaPredicted RBP16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 GRB7Q14451 532 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ZNF598Q86UK7 904 aaKnown RBP16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 DHFR2Q86XF0 187 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 NUP93Q8N1F7 819 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 GPR150Q8NGU9 434 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 EXT2Q93063 718 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ABHD8Q96I13 439 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 DNAJC1Q96KC8 554 aaKnown RBP16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 CIB1Q99828 191 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 GALNT8Q9NY28 637 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ARL5AQ9Y689 179 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ANKRD36A6QL64 1941 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 A0A0J9YYE9 177 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 CCDC162PA2VCL2 907 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 H3BMM5 538 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 UBXN8O00124 270 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 NME4O00746 187 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 MUSKO15146 869 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 CD3EAPO15446 510 aaKnown RBP16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 TIPRLO75663 272 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 TBX18O95935 607 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 NR1H2P55055 460 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 YBX1P67809 324 aaKnown RBP16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 EFEMP1Q12805 493 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 RAP1GAP2Q684P5 730 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 BORAQ6PGQ7 559 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 DEFB128Q7Z7B8 93 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 MYO1HQ8N1T3 1032 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ANKFN1Q8N957 763 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 SLC43A3Q8NBI5 491 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 CANT1Q8WVQ1 401 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 PBXIP1Q96AQ6 731 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 NSUN5Q96P11 429 aaKnown RBP16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 TUBB1Q9H4B7 451 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 DUS2Q9NX74 493 aaKnown RBP16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ABCD2Q9UBJ2 740 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 SUN2Q9UH99 717 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 DMTF1Q9Y222 760 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 PRUNE2Q8WUY3 3088 aa16.04■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ARHGEF37A1IGU5 675 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 DRGXA6NNA5 263 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 PLOD2O00469 737 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 PIP5K1BO14986 540 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 GLP2RO95838 553 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ASLP04424 464 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ZNF37AP17032 561 aaPredicted RBP16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 CAPN3P20807 821 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 MAGEA10P43363 369 aaPredicted RBP16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 NME5P56597 212 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 STX1BP61266 288 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 IL10RBQ08334 325 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 MAP7Q14244 749 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 KANK2Q63ZY3 851 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 CIR1Q86X95 450 aaPredicted RBP16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ZNF354CQ86Y25 554 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ZNF280BQ86YH2 543 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 RYBPQ8N488 228 aaPredicted RBP16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 OR13C4Q8NGS5 318 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 OR2T34Q8NGX1 318 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 OR2T3Q8NH03 318 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 MYEOVQ96EZ4 313 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ZNF512Q96ME7 567 aaPredicted RBP16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ATOH8Q96SQ7 321 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 SEMA3CQ99985 751 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 MID1IP1Q9NPA3 183 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ARMC1Q9NVT9 282 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 BBIP1A8MTZ0 92 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 AZIN1O14977 448 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 HTRA2O43464 458 aaPredicted RBP16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 CKMT2P17540 419 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ACVRL1P37023 503 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 SERINC3Q13530 473 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 TRIM71Q2Q1W2 868 aaKnown RBP16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 NECAB2Q7Z6G3 386 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 GRIN3AQ8TCU5 1115 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 TWIST2Q8WVJ9 160 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ZUFSPQ96AP4 578 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 C8orf48Q96LL4 319 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 KCNA7Q96RP8 456 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 SLC52A3Q9NQ40 469 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 OLAHQ9NV23 265 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 CIDEBQ9UHD4 219 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 WDR37Q9Y2I8 494 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 CEPT1Q9Y6K0 416 aa16.03■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 GBF1Q92538 1859 aa16.02■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 CHD9Q3L8U1 2897 aa16.02■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 A0A1B0GTL3 188 aa16.02■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 H3BSA7 217 aa16.02■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 FXYD1O00168 92 aa16.02■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 NR5A2O00482 541 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms