RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 ADGRG2Q8IZP9 1017 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 CYP4X1Q8N118 509 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 OR13C4Q8NGS5 318 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 PIP4K2CQ8TBX8 421 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 KCTD4Q8WVF5 259 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 TRIB3Q96RU7 358 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 AGAP2Q99490 1192 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 ZBTB18Q99592 522 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 POLMQ9NP87 494 aaPredicted RBP8.34□□□□□ -1.07
USP54-215ENST00000497106 COPG2Q9UBF2 871 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 NEU3Q9UQ49 428 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 CCT8L1PA6NM43 557 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 WNT9AO14904 365 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 BUD23O43709 281 aaKnown RBP8.34□□□□□ -1.07
USP54-215ENST00000497106 DIAPH2O60879 1101 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 ATG13O75143 517 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 FAM155BO75949 473 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 KAT7O95251 611 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 ATXN1LP0C7T5 689 aaKnown RBP8.34□□□□□ -1.07
USP54-215ENST00000497106 ESRRAP11474 423 aaPredicted RBP8.34□□□□□ -1.07
USP54-215ENST00000497106 TFEBP19484 476 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 VIPR2P41587 438 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 HNRNPH2P55795 449 aaKnown RBP8.34□□□□□ -1.07
USP54-215ENST00000497106 PEX6Q13608 980 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 EML3Q32P44 896 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 SEL1L3Q68CR1 1132 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 DPY19L3Q6ZPD9 716 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 ZBTB2Q8N680 514 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 ZNF707Q96C28 371 aaPredicted RBP8.34□□□□□ -1.07
USP54-215ENST00000497106 DCTN4Q9UJW0 460 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 FBXL21Q9UKT6 434 aa8.34□□□□□ -1.07
USP54-215ENST00000497106 BTN3A1O00481 513 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 EDF1O60869 148 aaKnown RBP8.33□□□□□ -1.08
USP54-215ENST00000497106 KATNA1O75449 491 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 PRAMEF12O95522 483 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 MLYCDO95822 493 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 CATP04040 527 aaKnown RBP8.33□□□□□ -1.08
USP54-215ENST00000497106 DRD4P21917 467 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 GLRBP48167 497 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 RNF43Q68DV7 783 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 RAET1GQ6H3X3 334 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 CYB5D2Q8WUJ1 264 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 SCRN2Q96FV2 425 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 KXD1Q9BQD3 176 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 LINC00597Q9H2U6 94 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 PHPT1Q9NRX4 125 aaPredicted RBP8.33□□□□□ -1.08
USP54-215ENST00000497106 DNAJC16Q9Y2G8 782 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 TSC2P49815 1807 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 KLHL33A6NCF5 533 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 EIF3FO00303 357 aaPredicted RBP8.33□□□□□ -1.08
USP54-215ENST00000497106 GFRA2O00451 464 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 CR2P20023 1033 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 DRD1P21728 446 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 RPS3P23396 243 aaKnown RBP eCLIP8.33□□□□□ -1.08
USP54-215ENST00000497106 HLA-FP30511 346 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 SGSHP51688 502 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 PDE1CQ14123 709 aaPredicted RBP8.33□□□□□ -1.08
USP54-215ENST00000497106 TNFAIP8L3Q5GJ75 292 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 CHRDL2Q6WN34 429 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 DENND6AQ8IWF6 608 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 TRAM1L1Q8N609 369 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 KCNJ9Q92806 393 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 AP2M1Q96CW1 435 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 NDNQ99608 321 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 POMKQ9H5K3 350 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 XPR1Q9UBH6 696 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 RAP2CQ9Y3L5 183 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 C16orf96A6NNT2 1141 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 WASH3PC4AMC7 463 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 IFRD1O00458 451 aaPredicted RBP8.33□□□□□ -1.08
USP54-215ENST00000497106 STK25O00506 426 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 TYROBPO43914 113 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 NPHS1O60500 1241 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 SUPT7LO94864 414 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 PBX2P40425 430 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 ZNF140P52738 457 aaPredicted RBP8.33□□□□□ -1.08
USP54-215ENST00000497106 IRX1P78414 480 aaPredicted RBP8.33□□□□□ -1.08
USP54-215ENST00000497106 HNRNPA1L2Q32P51 320 aaKnown RBP8.33□□□□□ -1.08
USP54-215ENST00000497106 CMC1Q7Z7K0 106 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 ASZ1Q8WWH4 475 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 PPM1EQ8WY54 764 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 ITFG2Q969R8 447 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 GDF15Q99988 308 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 KDM4CQ9H3R0 1056 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 SLC2A6Q9UGQ3 507 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 MOSPD1Q9UJG1 213 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 ATXN2Q99700 1313 aaKnown RBP8.33□□□□□ -1.08
USP54-215ENST00000497106 MROH6A6NGR9 719 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 LRRC72A6NJI9 287 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 TSPAN6O43657 245 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 ZBTB14O43829 449 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 AHSGP02765 367 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 ANXA5P08758 320 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 NCF2P19878 526 aaPredicted RBP8.33□□□□□ -1.08
USP54-215ENST00000497106 PPM1FP49593 454 aaPredicted RBP8.33□□□□□ -1.08
USP54-215ENST00000497106 GRM2Q14416 872 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 AAK1Q2M2I8 961 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 ADGRD2Q7Z7M1 963 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 DNASE1L2Q92874 299 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 NUS1Q96E22 293 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms