RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 FBXO39Q8N4B4 442 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 SLC43A3Q8NBI5 491 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 ADCY4Q8NFM4 1077 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 SPDYE1Q8NFV5 336 aaPredicted RBP11.16□□□□□ -0.62
CHMP3-209ENST00000494623 TUBGCP3Q96CW5 907 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 LRCH3Q96II8 777 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 CNBD2Q96M20 576 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 GPR21Q99679 349 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 POPDC3Q9HBV1 291 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 MRPL40Q9NQ50 206 aaKnown RBP11.16□□□□□ -0.62
CHMP3-209ENST00000494623 INTS10Q9NVR2 710 aaKnown RBP11.16□□□□□ -0.62
CHMP3-209ENST00000494623 SUCOQ9UBS9 1254 aaKnown RBP11.16□□□□□ -0.62
CHMP3-209ENST00000494623 SARDHQ9UL12 918 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 AGO1Q9UL18 857 aaKnown RBP11.16□□□□□ -0.62
CHMP3-209ENST00000494623 PCDHGB4Q9UN71 923 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 AP4S1Q9Y587 144 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 PCDHGB5Q9Y5G0 923 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 RAI2Q9Y5P3 530 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 GREB1Q4ZG55 1949 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 A0A0J9YYE9 177 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 ZNF840PA6NDX5 716 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 TRIM24O15164 1050 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 OR1I1O60431 355 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 CLDN11O75508 207 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 CRCPO75575 148 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 CSPG5O95196 566 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 SLC7A2P52569 658 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 CLCQ05315 142 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 RAD51Q06609 339 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 ELAVL2Q12926 359 aaKnown RBP11.16□□□□□ -0.62
CHMP3-209ENST00000494623 TAF1AQ15573 450 aaPredicted RBP11.16□□□□□ -0.62
CHMP3-209ENST00000494623 VPS26BQ4G0F5 336 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 C6orf52Q5T4I8 152 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 RNF219Q5W0B1 726 aaPredicted RBP11.16□□□□□ -0.62
CHMP3-209ENST00000494623 ALG1LQ6GMV1 187 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 AFTPHQ6ULP2 937 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 KIAA1191Q96A73 305 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 ESAMQ96AP7 390 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 ASB2Q96Q27 587 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 FAM192AQ9GZU8 254 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 MUC3BQ9H195 1237 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 TUBB1Q9H4B7 451 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 UBAP1Q9NZ09 502 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 FKBPLQ9UIM3 349 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 MED16Q9Y2X0 877 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 TIMM22Q9Y584 194 aa11.16□□□□□ -0.62
CHMP3-209ENST00000494623 DENRO43583 198 aaKnown RBP11.15□□□□□ -0.62
CHMP3-209ENST00000494623 KERAO60938 352 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 ECI2O75521 394 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 MTA1Q13330 715 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 RPS6KA2Q15349 733 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 LIN52Q52LA3 116 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 ZRANB3Q5FWF4 1079 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 PSAPL1Q6NUJ1 521 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 RETREG3Q86VR2 466 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 NPAS4Q8IUM7 802 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 PIANPQ8IYJ0 282 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 TMEM102Q8N9M5 508 aaPredicted RBP11.15□□□□□ -0.62
CHMP3-209ENST00000494623 CATSPER1Q8NEC5 780 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 C2orf15Q8WU43 125 aaKnown RBP11.15□□□□□ -0.62
CHMP3-209ENST00000494623 WBP2Q969T9 261 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 CDK5RAP1Q96SZ6 601 aaKnown RBP11.15□□□□□ -0.62
CHMP3-209ENST00000494623 SLC30A3Q99726 388 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 TSEN34Q9BSV6 310 aaKnown RBP11.15□□□□□ -0.62
CHMP3-209ENST00000494623 TTLL2Q9BWV7 592 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 TDRD1Q9BXT4 1180 aaKnown RBP11.15□□□□□ -0.62
CHMP3-209ENST00000494623 Q9H521 79 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 PAPOLBQ9NRJ5 636 aaKnown RBP11.15□□□□□ -0.62
CHMP3-209ENST00000494623 TMEM181Q9P2C4 612 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 RIMKLBQ9ULI2 386 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 AP4B1Q9Y6B7 739 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 C15orf38-AP3S2A0A0A6YYH1 394 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 NPEPPSL1A6NEC2 478 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 BTN3A1O00481 513 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 HGFP14210 728 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 CR2P20023 1033 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 HOXD10P28358 340 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 MC4RP32245 332 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 GRIA2P42262 883 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 PSMD8P48556 350 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 ACADVLP49748 655 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 AGTR2P50052 363 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 GK3PQ14409 553 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 NRF1Q16656 503 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 MAP7D1Q3KQU3 841 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 KANK2Q63ZY3 851 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 ANKS6Q68DC2 871 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 SCIMPQ6UWF3 145 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 ARPINQ7Z6K5 226 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 SIDT2Q8NBJ9 832 aaKnown RBP11.15□□□□□ -0.62
CHMP3-209ENST00000494623 TTC16Q8NEE8 873 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 LRTOMTQ8WZ04 291 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 SEPT8Q92599 483 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 EME1Q96AY2 570 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 SLC45A3Q96JT2 553 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 CENPKQ9BS16 269 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 DERL2Q9GZP9 239 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 RNF38Q9H0F5 515 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 CD300AQ9UGN4 299 aa11.15□□□□□ -0.62
CHMP3-209ENST00000494623 ARIH1Q9Y4X5 557 aaPredicted RBP11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms