RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 TPST1O60507 370 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 ECI2O75521 394 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 ZDHHC11BP0C7U3 371 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 UQCRBP14927 111 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 MAPKAPK2P49137 400 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 ARF5P84085 180 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 SLC14A2Q15849 920 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 AMIGO2Q86SJ2 522 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 LCA5Q86VQ0 697 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 CARNMT1Q8N4J0 409 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 TUBGCP3Q96CW5 907 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 MGME1Q9BQP7 344 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 ABCG8Q9H221 673 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 UBAP1Q9NZ09 502 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 AGO1Q9UL18 857 aaKnown RBP12.4□□□□□ -0.42
HMGN1-220ENST00000492280 RNF112Q9ULX5 631 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 RAI2Q9Y5P3 530 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 CROCCQ5TZA2 2017 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 MOXD2PA6NHM9 499 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 ZNF839A8K0R7 811 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 PEX1O43933 1283 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 TBC1D4O60343 1298 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 OR6B1O95007 311 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 CAPN3P20807 821 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 MC4RP32245 332 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 CASP2P42575 452 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 POLD2P49005 469 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 POLE2P56282 527 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 LRP8Q14114 963 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 CYTH1Q15438 398 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 UGT3A2Q3SY77 523 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 KIAA1841Q6NSI8 718 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 CPNE9Q8IYJ1 553 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 ICA1LQ8NDH6 482 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 LRTOMTQ8WZ04 291 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 LPGAT1Q92604 370 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 VPS33AQ96AX1 596 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 TEX37Q96LM6 180 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 TDRD1Q9BXT4 1180 aaKnown RBP12.4□□□□□ -0.42
HMGN1-220ENST00000492280 PIF1Q9H611 641 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 REV3LO60673 3130 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 NUP214P35658 2090 aaPredicted RBP12.4□□□□□ -0.42
HMGN1-220ENST00000492280 ANAPC1Q9H1A4 1944 aa12.4□□□□□ -0.43
HMGN1-220ENST00000492280 C15orf38-AP3S2A0A0A6YYH1 394 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 BNIP3LO60238 219 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 NDUFS3O75489 264 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 C1RP00736 705 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 CA8P35219 290 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 YBEYP58557 167 aaPredicted RBP12.39□□□□□ -0.43
HMGN1-220ENST00000492280 HTRA3P83110 453 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 ZXDBP98169 803 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 PLIN5Q00G26 463 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 ADGRE1Q14246 886 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 SQLEQ14534 574 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 PDK3Q15120 406 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 AAK1Q2M2I8 961 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 OGFRL1Q5TC84 451 aaPredicted RBP12.39□□□□□ -0.43
HMGN1-220ENST00000492280 CHSY3Q70JA7 882 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 LARP4Q71RC2 724 aaKnown RBP eCLIP12.39□□□□□ -0.432e-12■■■■■ 31.7
HMGN1-220ENST00000492280 ARPINQ7Z6K5 226 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 ADGRG6Q86SQ4 1221 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 NPAS4Q8IUM7 802 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 DIS3LQ8TF46 1054 aaKnown RBP12.39□□□□□ -0.43
HMGN1-220ENST00000492280 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.39□□□□□ -0.434e-10■■■■□ 24
HMGN1-220ENST00000492280 SEPT3Q9UH03 358 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 PCDHB9Q9Y5E1 797 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 V9GYQ6 96 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 ZFC3H1O60293 1989 aaKnown RBP12.39□□□□□ -0.43
HMGN1-220ENST00000492280 A0A0J9YYE9 177 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 TMCC1O94876 653 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 CD160O95971 181 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 HMGA1P17096 107 aaKnown RBP12.39□□□□□ -0.43
HMGN1-220ENST00000492280 RING1Q06587 406 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 TAF12Q16514 161 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 SPOUT1Q5T280 376 aaKnown RBP12.39□□□□□ -0.43
HMGN1-220ENST00000492280 TAS2R42Q7RTR8 314 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 SETD3Q86TU7 594 aaPredicted RBP12.39□□□□□ -0.43
HMGN1-220ENST00000492280 IFNEQ86WN2 208 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 SLC22A9Q8IVM8 553 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 FBXO39Q8N4B4 442 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 PAF1Q8N7H5 531 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 EEF1AKMT1Q8WVE0 214 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 PSKH2Q96QS6 385 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 CCDC68Q9H2F9 335 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 HMX1Q9NP08 348 aaPredicted RBP12.39□□□□□ -0.43
HMGN1-220ENST00000492280 CREBZFQ9NS37 354 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 FNIP2Q9P278 1114 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 EIF2B4Q9UI10 523 aaKnown RBP12.39□□□□□ -0.43
HMGN1-220ENST00000492280 ZNF225Q9UK10 706 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 USP22Q9UPT9 525 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 EYSQ5T1H1 3165 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 PLXNA4Q9HCM2 1894 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 AZIN1O14977 448 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 BCAS2O75934 225 aaPredicted RBP12.39□□□□□ -0.43
HMGN1-220ENST00000492280 SNRPB2P08579 225 aaKnown RBP12.39□□□□□ -0.43
HMGN1-220ENST00000492280 HGFP14210 728 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 ATP6V1B1P15313 513 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 PSMC3P17980 439 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 SLC11A2P49281 568 aa12.39□□□□□ -0.43
HMGN1-220ENST00000492280 HK3P52790 923 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms