RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 USP29Q9HBJ7 922 aa18.03■□□□□ 0.48
COL9A3-214ENST00000490398 ARFGAP3Q9NP61 516 aa18.03■□□□□ 0.48
COL9A3-214ENST00000490398 SPATS2LQ9NUQ6 558 aaKnown RBP18.03■□□□□ 0.48
COL9A3-214ENST00000490398 PADI4Q9UM07 663 aa18.03■□□□□ 0.48
COL9A3-214ENST00000490398 GUCA1BQ9UMX6 200 aa18.03■□□□□ 0.48
COL9A3-214ENST00000490398 PCDHB1Q9Y5F3 818 aa18.03■□□□□ 0.48
COL9A3-214ENST00000490398 GOLGA6L6A8MZA4 724 aa18.02■□□□□ 0.48
COL9A3-214ENST00000490398 PDE2AO00408 941 aaPredicted RBP18.02■□□□□ 0.48
COL9A3-214ENST00000490398 MTSS1O43312 755 aa18.02■□□□□ 0.48
COL9A3-214ENST00000490398 NOBOXO60393 691 aa18.02■□□□□ 0.48
COL9A3-214ENST00000490398 KRT37O76014 449 aa18.02■□□□□ 0.48
COL9A3-214ENST00000490398 ATP1A1P05023 1023 aaKnown RBP18.02■□□□□ 0.48
COL9A3-214ENST00000490398 CDK4P11802 303 aa18.02■□□□□ 0.48
COL9A3-214ENST00000490398 DUSP3P51452 185 aaPredicted RBP18.02■□□□□ 0.48
COL9A3-214ENST00000490398 CCZ1BP86790 482 aa18.02■□□□□ 0.48
COL9A3-214ENST00000490398 CCZ1P86791 482 aaPredicted RBP18.02■□□□□ 0.48
COL9A3-214ENST00000490398 E2F1Q01094 437 aa18.02■□□□□ 0.48
COL9A3-214ENST00000490398 CYP4F3Q08477 520 aa18.02■□□□□ 0.48
COL9A3-214ENST00000490398 KLF1Q13351 362 aaPredicted RBP18.02■□□□□ 0.48
COL9A3-214ENST00000490398 LVRNQ6Q4G3 990 aa18.02■□□□□ 0.48
COL9A3-214ENST00000490398 LRRC8AQ8IWT6 810 aa18.02■□□□□ 0.48
COL9A3-214ENST00000490398 SYCE1Q8N0S2 351 aa18.02■□□□□ 0.48
COL9A3-214ENST00000490398 ARL10Q8N8L6 244 aa18.02■□□□□ 0.48
COL9A3-214ENST00000490398 FAM46DQ8NEK8 389 aa18.02■□□□□ 0.48
COL9A3-214ENST00000490398 IPMKQ8NFU5 416 aa18.02■□□□□ 0.48
COL9A3-214ENST00000490398 MAPK15Q8TD08 544 aa18.02■□□□□ 0.48
COL9A3-214ENST00000490398 GPBAR1Q8TDU6 330 aa18.02■□□□□ 0.48
COL9A3-214ENST00000490398 HIC2Q96JB3 615 aa18.02■□□□□ 0.48
COL9A3-214ENST00000490398 MAGEE1Q9HCI5 957 aa18.02■□□□□ 0.48
COL9A3-214ENST00000490398 PKD2L2Q9NZM6 624 aa18.02■□□□□ 0.48
COL9A3-214ENST00000490398 RSPH14Q9UHP6 348 aa18.02■□□□□ 0.48
COL9A3-214ENST00000490398 DNPEPQ9ULA0 475 aa18.02■□□□□ 0.48
COL9A3-214ENST00000490398 CLCA2Q9UQC9 943 aa18.02■□□□□ 0.48
COL9A3-214ENST00000490398 PRKAB1Q9Y478 270 aa18.02■□□□□ 0.48
COL9A3-214ENST00000490398 DSPP15924 2871 aaKnown RBP18.02■□□□□ 0.48
COL9A3-214ENST00000490398 ASXL3Q9C0F0 2248 aa18.02■□□□□ 0.47
COL9A3-214ENST00000490398 MIF4GDA9UHW6 222 aaKnown RBP18.01■□□□□ 0.47
COL9A3-214ENST00000490398 B4DGG1 531 aa18.01■□□□□ 0.47
COL9A3-214ENST00000490398 KCNN4O15554 427 aa18.01■□□□□ 0.47
COL9A3-214ENST00000490398 ARHGAP6O43182 974 aa18.01■□□□□ 0.47
COL9A3-214ENST00000490398 AGTP01019 485 aa18.01■□□□□ 0.47
COL9A3-214ENST00000490398 GP1BAP07359 652 aa18.01■□□□□ 0.47
COL9A3-214ENST00000490398 IVLP07476 585 aa18.01■□□□□ 0.47
COL9A3-214ENST00000490398 BPIP17213 487 aa18.01■□□□□ 0.47
COL9A3-214ENST00000490398 ADCY8P40145 1251 aa18.01■□□□□ 0.47
COL9A3-214ENST00000490398 CTBSQ01459 385 aa18.01■□□□□ 0.47
COL9A3-214ENST00000490398 ANKRD20A2Q5SQ80 823 aa18.01■□□□□ 0.47
COL9A3-214ENST00000490398 ANKRD20A1Q5TYW2 823 aa18.01■□□□□ 0.47
COL9A3-214ENST00000490398 ANKRD20A3Q5VUR7 823 aa18.01■□□□□ 0.47
COL9A3-214ENST00000490398 DARS2Q6PI48 645 aaKnown RBP18.01■□□□□ 0.47
COL9A3-214ENST00000490398 OGFOD3Q6PK18 319 aa18.01■□□□□ 0.47
COL9A3-214ENST00000490398 CDKL3Q8IVW4 592 aaPredicted RBP18.01■□□□□ 0.47
COL9A3-214ENST00000490398 TTC30BQ8N4P2 665 aa18.01■□□□□ 0.47
COL9A3-214ENST00000490398 RNF10Q8N5U6 811 aaKnown RBP18.01■□□□□ 0.47
COL9A3-214ENST00000490398 UBL4BQ8N7F7 174 aa18.01■□□□□ 0.47
COL9A3-214ENST00000490398 GPR156Q8NFN8 814 aa18.01■□□□□ 0.47
COL9A3-214ENST00000490398 CCDC110Q8TBZ0 833 aa18.01■□□□□ 0.47
COL9A3-214ENST00000490398 CCHCR1Q8TD31 782 aa18.01■□□□□ 0.47
COL9A3-214ENST00000490398 PATE1Q8WXA2 126 aa18.01■□□□□ 0.47
COL9A3-214ENST00000490398 SCARF2Q96GP6 870 aaPredicted RBP18.01■□□□□ 0.47
COL9A3-214ENST00000490398 VAT1Q99536 393 aa18.01■□□□□ 0.47
COL9A3-214ENST00000490398 CCDC3Q9BQI4 270 aa18.01■□□□□ 0.47
COL9A3-214ENST00000490398 GPR63Q9BZJ6 419 aa18.01■□□□□ 0.47
COL9A3-214ENST00000490398 GBA3Q9H227 469 aa18.01■□□□□ 0.47
COL9A3-214ENST00000490398 BPIFA1Q9NP55 256 aa18.01■□□□□ 0.47
COL9A3-214ENST00000490398 TRHDEQ9UKU6 1024 aa18.01■□□□□ 0.47
COL9A3-214ENST00000490398 BUD23O43709 281 aaKnown RBP18■□□□□ 0.47
COL9A3-214ENST00000490398 TJP3O95049 919 aa18■□□□□ 0.47
COL9A3-214ENST00000490398 FGF1P05230 155 aa18■□□□□ 0.47
COL9A3-214ENST00000490398 PSMB4P28070 264 aa18■□□□□ 0.47
COL9A3-214ENST00000490398 CA5AP35218 305 aa18■□□□□ 0.47
COL9A3-214ENST00000490398 PTPRCAPQ14761 206 aa18■□□□□ 0.47
COL9A3-214ENST00000490398 RAVER1Q8IY67 606 aaKnown RBP18■□□□□ 0.47
COL9A3-214ENST00000490398 TXLNBQ8N3L3 684 aa18■□□□□ 0.47
COL9A3-214ENST00000490398 PDCD7Q8N8D1 485 aaKnown RBP18■□□□□ 0.47
COL9A3-214ENST00000490398 GLMNQ92990 594 aa18■□□□□ 0.47
COL9A3-214ENST00000490398 CCDC74AQ96AQ1 378 aa18■□□□□ 0.47
COL9A3-214ENST00000490398 APOL2Q9BQE5 337 aa18■□□□□ 0.47
COL9A3-214ENST00000490398 FICDQ9BVA6 458 aa18■□□□□ 0.47
COL9A3-214ENST00000490398 CCDC86Q9H6F5 360 aaKnown RBP18■□□□□ 0.47
COL9A3-214ENST00000490398 NCKIPSDQ9NZQ3 722 aa18■□□□□ 0.47
COL9A3-214ENST00000490398 TMPRSS11EQ9UL52 423 aa18■□□□□ 0.47
COL9A3-214ENST00000490398 GPSM3Q9Y4H4 160 aa18■□□□□ 0.47
COL9A3-214ENST00000490398 COL27A1Q8IZC6 1860 aaPredicted RBP18■□□□□ 0.47
COL9A3-214ENST00000490398 A0A1W2PNU3 283 aaPredicted RBP17.99■□□□□ 0.47
COL9A3-214ENST00000490398 RGSL1A5PLK6 1076 aa17.99■□□□□ 0.47
COL9A3-214ENST00000490398 TMEM8BA6NDV4 472 aa17.99■□□□□ 0.47
COL9A3-214ENST00000490398 SRRM3A6NNA2 597 aaPredicted RBP17.99■□□□□ 0.47
COL9A3-214ENST00000490398 ASMTLO95671 621 aa17.99■□□□□ 0.47
COL9A3-214ENST00000490398 RPIAP49247 311 aa17.99■□□□□ 0.47
COL9A3-214ENST00000490398 GDF10P55107 478 aa17.99■□□□□ 0.47
COL9A3-214ENST00000490398 MAZP56270 477 aaKnown RBP17.99■□□□□ 0.47
COL9A3-214ENST00000490398 SLC1A5Q15758 541 aa17.99■□□□□ 0.47
COL9A3-214ENST00000490398 PYCR3Q53H96 274 aa17.99■□□□□ 0.47
COL9A3-214ENST00000490398 SLC30A9Q6PML9 568 aa17.99■□□□□ 0.47
COL9A3-214ENST00000490398 PROSER1Q86XN7 944 aa17.99■□□□□ 0.47
COL9A3-214ENST00000490398 SDR16C5Q8N3Y7 309 aa17.99■□□□□ 0.47
COL9A3-214ENST00000490398 SCG3Q8WXD2 468 aaKnown RBP17.99■□□□□ 0.47
COL9A3-214ENST00000490398 ABCG4Q9H172 646 aa17.99■□□□□ 0.47
COL9A3-214ENST00000490398 DPEP2Q9H4A9 486 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms