RNA–Protein interactions for RNA: ENST00000486941.1

SNRNP40-205, Transcript of small nuclear ribonucleoprotein U5 subunit 40, human

TSL 2

Gene SNRNP40, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRNP40-205	ENST00000486941	ZNF280D	Q6N043	979 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	RINT1	Q6NUQ1	792 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	VIT	Q6UXI7	678 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	C1orf186	Q6ZWK4	172 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	DAW1	Q8N136	415 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	SPEM1	Q8N4L4	309 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	C4orf32	Q8N8J7	132 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	ACRBP	Q8NEB7	543 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	BEST2	Q8NFU1	509 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	C8orf76	Q96K31	380 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	TSPAN18	Q96SJ8	248 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	TCHP	Q9BT92	498 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	TIPIN	Q9BVW5	301 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	RAB34	Q9BZG1	259 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	C8orf33	Q9H7E9	229 aa	Predicted RBP	4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	PLEKHA5	Q9HAU0	1116 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	ASAH2	Q9NR71	780 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	GAR1	Q9NY12	217 aa	Known RBP	4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	USP24	Q9UPU5	2620 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	PIAS3	Q9Y6X2	628 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	PCNX2	A6NKB5	2137 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	TCHH	Q07283	1943 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	NUP205	Q92621	2012 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	FAM208B	Q5VWN6	2430 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	PI4KA	P42356	2102 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	ABCA7	Q8IZY2	2146 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	EML5	Q05BV3	1969 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	CEP295	Q9C0D2	2601 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	OR6C75	A6NL08	312 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	HEPACAM2	A8MVW5	462 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941		E9PMD0	336 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	LAD1	O00515	517 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	SLC16A4	O15374	487 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	SMAD6	O43541	496 aa	Known RBP	4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	TOM1L1	O75674	476 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	UBXN7	O94888	489 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	FGF19	O95750	216 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	MYL4	P12829	197 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	TYMP	P19971	482 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	CYP3A5	P20815	502 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	PAX3	P23760	479 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	CCNE1	P24864	410 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	PRPH	P41219	470 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	AARS	P49588	968 aa	Known RBP eCLIP	4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	SATB1	Q01826	763 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	YWHAH	Q04917	246 aa	Predicted RBP	4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	ST3GAL1	Q11201	340 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	GPR17	Q13304	367 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	PLD1	Q13393	1074 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	CCNI	Q14094	377 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	SIM2	Q14190	667 aa	Predicted RBP	4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	ERV3-1	Q14264	604 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	TEAD2	Q15562	447 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	ZBTB6	Q15916	424 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	ARHGAP29	Q52LW3	1261 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	LCE1E	Q5T753	118 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	KRT79	Q5XKE5	535 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	KIAA1161	Q6NSJ0	714 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	RANBP10	Q6VN20	620 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	ZBTB46	Q86UZ6	589 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	LONP2	Q86WA8	852 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	RALGPS2	Q86X27	583 aa	Predicted RBP	4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	YAF2	Q8IY57	180 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	METTL25	Q8N6Q8	603 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	CSGALNACT1	Q8TDX6	532 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	C18orf25	Q96B23	403 aa	Predicted RBP	4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	LLPH	Q9BRT6	129 aa	Known RBP	4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	TRIM5	Q9C035	493 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	DDX19A	Q9NUU7	478 aa	Known RBP	4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	OBP2A	Q9NY56	170 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	NOL7	Q9UMY1	257 aa	Known RBP	4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	ASB3	Q9Y575	518 aa		4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	MYO18A	Q92614	2054 aa	Known RBP	4.24	□□□□□ -1.73
SNRNP40-205	ENST00000486941	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	4.23	□□□□□ -1.73
SNRNP40-205	ENST00000486941	TTC26	A0AVF1	554 aa		4.23	□□□□□ -1.73
SNRNP40-205	ENST00000486941	MYBPHL	A2RUH7	354 aa		4.23	□□□□□ -1.73
SNRNP40-205	ENST00000486941	SLC38A8	A6NNN8	435 aa		4.23	□□□□□ -1.73
SNRNP40-205	ENST00000486941	SPECC1L-ADORA2A	F8WAN1	911 aa		4.23	□□□□□ -1.73
SNRNP40-205	ENST00000486941		H0YCG3	227 aa		4.23	□□□□□ -1.73
SNRNP40-205	ENST00000486941	MYO1C	O00159	1063 aa		4.23	□□□□□ -1.73
SNRNP40-205	ENST00000486941	CLDN3	O15551	220 aa		4.23	□□□□□ -1.73
SNRNP40-205	ENST00000486941	VNN2	O95498	520 aa		4.23	□□□□□ -1.73
SNRNP40-205	ENST00000486941	ADRB2	P07550	413 aa		4.23	□□□□□ -1.73
SNRNP40-205	ENST00000486941	CLTA	P09496	248 aa		4.23	□□□□□ -1.73
SNRNP40-205	ENST00000486941	HARS	P12081	509 aa	Known RBP	4.23	□□□□□ -1.73
SNRNP40-205	ENST00000486941	GJA1	P17302	382 aa		4.23	□□□□□ -1.73
SNRNP40-205	ENST00000486941	SCP2	P22307	547 aa		4.23	□□□□□ -1.73
SNRNP40-205	ENST00000486941	U2AF2	P26368	475 aa	Known RBP eCLIP	4.23	□□□□□ -1.73	4e-6	■■■■□ 22.2
SNRNP40-205	ENST00000486941	TUFM	P49411	452 aa	Known RBP	4.23	□□□□□ -1.73
SNRNP40-205	ENST00000486941	NEK2	P51955	445 aa		4.23	□□□□□ -1.73
SNRNP40-205	ENST00000486941	LIMK1	P53667	647 aa		4.23	□□□□□ -1.73
SNRNP40-205	ENST00000486941	TIRAP	P58753	221 aa		4.23	□□□□□ -1.73
SNRNP40-205	ENST00000486941	HMGN5	P82970	282 aa	Known RBP	4.23	□□□□□ -1.73
SNRNP40-205	ENST00000486941	TIAL1	Q01085	375 aa	Known RBP eCLIP	4.23	□□□□□ -1.73
SNRNP40-205	ENST00000486941	MCL1	Q07820	350 aa		4.23	□□□□□ -1.73
SNRNP40-205	ENST00000486941	SLC14A1	Q13336	389 aa		4.23	□□□□□ -1.73
SNRNP40-205	ENST00000486941	MYBPC2	Q14324	1141 aa		4.23	□□□□□ -1.73
SNRNP40-205	ENST00000486941	LPAL2	Q16609	132 aa		4.23	□□□□□ -1.73
SNRNP40-205	ENST00000486941	KYAT1	Q16773	422 aa		4.23	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms