RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 PAPPAQ13219 1627 aa13.48□□□□□ -0.25
USP42-206ENST00000479544 MSH3P20585 1137 aa13.48□□□□□ -0.25
USP42-206ENST00000479544 OR1E1P30953 314 aa13.48□□□□□ -0.25
USP42-206ENST00000479544 PIWIL3Q7Z3Z3 882 aaKnown RBP13.48□□□□□ -0.25
USP42-206ENST00000479544 PIM3Q86V86 326 aa13.48□□□□□ -0.25
USP42-206ENST00000479544 SPNS2Q8IVW8 549 aa13.48□□□□□ -0.25
USP42-206ENST00000479544 SVOPQ8N4V2 548 aa13.48□□□□□ -0.25
USP42-206ENST00000479544 TSSK3Q96PN8 268 aa13.48□□□□□ -0.25
USP42-206ENST00000479544 HAPLN2Q9GZV7 340 aa13.48□□□□□ -0.25
USP42-206ENST00000479544 NAA50Q9GZZ1 169 aaKnown RBP13.48□□□□□ -0.25
USP42-206ENST00000479544 OGDHLQ9ULD0 1010 aa13.48□□□□□ -0.25
USP42-206ENST00000479544 AKAP11Q9UKA4 1901 aa13.48□□□□□ -0.25
USP42-206ENST00000479544 SLC12A8A0AV02 714 aa13.48□□□□□ -0.25
USP42-206ENST00000479544 DENRO43583 198 aaKnown RBP13.48□□□□□ -0.25
USP42-206ENST00000479544 JUNP05412 331 aaKnown RBP13.48□□□□□ -0.25
USP42-206ENST00000479544 SERPINF2P08697 491 aa13.48□□□□□ -0.25
USP42-206ENST00000479544 ADCYAP1R1P41586 468 aa13.48□□□□□ -0.25
USP42-206ENST00000479544 HARS2P49590 506 aaKnown RBP13.48□□□□□ -0.25
USP42-206ENST00000479544 RELAQ04206 551 aa13.48□□□□□ -0.25
USP42-206ENST00000479544 PMS2P3Q13401 168 aa13.48□□□□□ -0.25
USP42-206ENST00000479544 MED22Q15528 200 aa13.48□□□□□ -0.25
USP42-206ENST00000479544 TIGD7Q6NT04 549 aaPredicted RBP13.48□□□□□ -0.25
USP42-206ENST00000479544 SLC27A1Q6PCB7 646 aa13.48□□□□□ -0.25
USP42-206ENST00000479544 SLC45A3Q96JT2 553 aa13.48□□□□□ -0.25
USP42-206ENST00000479544 CDK15Q96Q40 435 aa13.48□□□□□ -0.25
USP42-206ENST00000479544 CINPQ9BW66 212 aaPredicted RBP13.48□□□□□ -0.25
USP42-206ENST00000479544 RPRD1BQ9NQG5 326 aaKnown RBP13.48□□□□□ -0.25
USP42-206ENST00000479544 PLK2Q9NYY3 685 aa13.48□□□□□ -0.25
USP42-206ENST00000479544 RBM47A0AV96 593 aaKnown RBP13.47□□□□□ -0.25
USP42-206ENST00000479544 NDUFS2O75306 463 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 S100A3P33764 101 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 CPOXP36551 454 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 IL12RB1P42701 662 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 CLCN5P51795 746 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 DGKQP52824 942 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 GRIK4Q16099 956 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 ZNF423Q2M1K9 1284 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 ZNF484Q5JVG2 852 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 PDZK1Q5T2W1 519 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 SLC15A4Q8N697 577 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 TXNDC5Q8NBS9 432 aaKnown RBP13.47□□□□□ -0.25
USP42-206ENST00000479544 FLCNQ8NFG4 579 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 RAB2BQ8WUD1 216 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 TMEM245Q9H330 911 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 GLOD4Q9HC38 313 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 TRPV5Q9NQA5 729 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 PSME2Q9UL46 239 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 XPNPEP2O43895 674 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 IDO1P14902 403 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 GSK3BP49841 420 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 SLC13A2Q13183 592 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 P2RY8Q86VZ1 359 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 ZC3HC1Q86WB0 502 aaKnown RBP13.47□□□□□ -0.25
USP42-206ENST00000479544 LILRA2Q8N149 483 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 METTL25Q8N6Q8 603 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 ZFP42Q96MM3 310 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 HAPLN3Q96S86 360 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 COLEC11Q9BWP8 271 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 GBA2Q9HCG7 927 aaPredicted RBP13.47□□□□□ -0.25
USP42-206ENST00000479544 WDR37Q9Y2I8 494 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 LTBP3Q9NS15 1303 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 FUOMA2VDF0 154 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 RAMP2O60895 175 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 IST1P53990 364 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 CEP78Q5JTW2 689 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 GPC2Q8N158 579 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 TTC30BQ8N4P2 665 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 CYP2S1Q96SQ9 504 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 ZNF696Q9H7X3 374 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 REEP1Q9H902 201 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 PRDM5Q9NQX1 630 aaPredicted RBP13.47□□□□□ -0.25
USP42-206ENST00000479544 MTRRQ9UBK8 725 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 SIX4Q9UIU6 781 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 YJEFN3A6XGL0 299 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 DIRAS1O95057 198 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 POLR2JP52435 117 aaKnown RBP13.47□□□□□ -0.25
USP42-206ENST00000479544 DIO3P55073 304 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 VBP1P61758 197 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 DPYSL2Q16555 572 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 ZCCHC8Q6NZY4 707 aaKnown RBP13.47□□□□□ -0.25
USP42-206ENST00000479544 KLHL17Q6TDP4 642 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 HFE2Q6ZVN8 426 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 STRADAQ7RTN6 431 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 GPR152Q8TDT2 470 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 S100ZQ8WXG8 99 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 FCRL2Q96LA5 508 aaPredicted RBP13.47□□□□□ -0.25
USP42-206ENST00000479544 SORT1Q99523 831 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 CLPBQ9H078 707 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 MROH8Q9H579 483 aa13.47□□□□□ -0.25
USP42-206ENST00000479544 A8MT66 165 aa13.46□□□□□ -0.25
USP42-206ENST00000479544 BCKDKO14874 412 aa13.46□□□□□ -0.25
USP42-206ENST00000479544 SERPIND1P05546 499 aa13.46□□□□□ -0.25
USP42-206ENST00000479544 OR1G1P47890 313 aa13.46□□□□□ -0.25
USP42-206ENST00000479544 OAZ1P54368 228 aa13.46□□□□□ -0.25
USP42-206ENST00000479544 TMEM236Q5W0B7 351 aa13.46□□□□□ -0.25
USP42-206ENST00000479544 FAM45BPQ6NSW5 357 aa13.46□□□□□ -0.25
USP42-206ENST00000479544 CAMKK1Q8N5S9 505 aa13.46□□□□□ -0.25
USP42-206ENST00000479544 ENKURQ8TC29 256 aa13.46□□□□□ -0.25
USP42-206ENST00000479544 STRA6Q9BX79 667 aa13.46□□□□□ -0.25
USP42-206ENST00000479544 GMEB1Q9Y692 573 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms