RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 ZNF548Q8NEK5 533 aaPredicted RBP5.34□□□□□ -1.55
SYNE1-220ENST00000471834 BEST2Q8NFU1 509 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 OR8J3Q8NGG0 315 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 FAR1Q8WVX9 515 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 METTL2AQ96IZ6 378 aaKnown RBP5.34□□□□□ -1.55
SYNE1-220ENST00000471834 TAPBPLQ9BX59 468 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 TRIM15Q9C019 465 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 ATAD3AQ9NVI7 634 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 INTS10Q9NVR2 710 aaKnown RBP5.34□□□□□ -1.55
SYNE1-220ENST00000471834 ZIM2Q9NZV7 527 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 SNX13Q9Y5W8 968 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 HNRNPCL2B2RXH8 293 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 TLL1O43897 1013 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 IRF1P10914 325 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 PAX3P23760 479 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 ADORA2BP29275 332 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 RPS9P46781 194 aaKnown RBP5.34□□□□□ -1.55
SYNE1-220ENST00000471834 EIF2B5Q13144 721 aaKnown RBP5.34□□□□□ -1.55
SYNE1-220ENST00000471834 DAG1Q14118 895 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 INAQ16352 499 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 RAB6CQ53S08 254 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 KANK2Q63ZY3 851 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 PAQR9Q6ZVX9 377 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 MPP5Q8N3R9 675 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 SMG8Q8ND04 991 aaKnown RBP5.34□□□□□ -1.55
SYNE1-220ENST00000471834 ZC3H15Q8WU90 426 aaKnown RBP5.34□□□□□ -1.55
SYNE1-220ENST00000471834 NCLNQ969V3 563 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 ZNF419Q96HQ0 510 aaPredicted RBP5.34□□□□□ -1.55
SYNE1-220ENST00000471834 PKMYT1Q99640 499 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 TSEN34Q9BSV6 310 aaKnown RBP5.34□□□□□ -1.55
SYNE1-220ENST00000471834 NAA50Q9GZZ1 169 aaKnown RBP5.34□□□□□ -1.55
SYNE1-220ENST00000471834 RAB6CQ9H0N0 254 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 MMP27Q9H306 513 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 PRDM12Q9H4Q4 367 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 CNOT6Q9ULM6 557 aaKnown RBP5.34□□□□□ -1.55
SYNE1-220ENST00000471834 STUB1Q9UNE7 303 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 LCTP09848 1927 aa5.34□□□□□ -1.56
SYNE1-220ENST00000471834 GOLGA8CPA6NN73 597 aa5.34□□□□□ -1.56
SYNE1-220ENST00000471834 A8MT66 165 aa5.34□□□□□ -1.56
SYNE1-220ENST00000471834 IFRD1O00458 451 aaPredicted RBP5.34□□□□□ -1.56
SYNE1-220ENST00000471834 PIGNO95427 931 aa5.34□□□□□ -1.56
SYNE1-220ENST00000471834 PTPN3P26045 913 aa5.34□□□□□ -1.56
SYNE1-220ENST00000471834 ADRA1BP35368 520 aa5.34□□□□□ -1.56
SYNE1-220ENST00000471834 GRIA3P42263 894 aa5.34□□□□□ -1.56
SYNE1-220ENST00000471834 ACTR2P61160 394 aa5.34□□□□□ -1.56
SYNE1-220ENST00000471834 CTAG1AP78358 180 aa5.34□□□□□ -1.56
SYNE1-220ENST00000471834 MBTD1Q05BQ5 628 aa5.34□□□□□ -1.56
SYNE1-220ENST00000471834 MTAPQ13126 283 aa5.34□□□□□ -1.56
SYNE1-220ENST00000471834 ELOAQ14241 798 aaKnown RBP5.34□□□□□ -1.56
SYNE1-220ENST00000471834 ACAP2Q15057 778 aa5.34□□□□□ -1.56
SYNE1-220ENST00000471834 CAPN13Q6MZZ7 669 aaPredicted RBP5.34□□□□□ -1.56
SYNE1-220ENST00000471834 ZNF567Q8N184 647 aa5.34□□□□□ -1.56
SYNE1-220ENST00000471834 UMODL1-AS1Q8N2C9 162 aa5.34□□□□□ -1.56
SYNE1-220ENST00000471834 OR6F1Q8NGZ6 308 aa5.34□□□□□ -1.56
SYNE1-220ENST00000471834 FAM149B1Q96BN6 582 aa5.34□□□□□ -1.56
SYNE1-220ENST00000471834 TAAR1Q96RJ0 339 aa5.34□□□□□ -1.56
SYNE1-220ENST00000471834 MAGIXQ9H6Y5 334 aa5.34□□□□□ -1.56
SYNE1-220ENST00000471834 ACOT9Q9Y305 439 aa5.34□□□□□ -1.56
SYNE1-220ENST00000471834 YDJCA8MPS7 323 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 CACNB4O00305 520 aaPredicted RBP5.33□□□□□ -1.56
SYNE1-220ENST00000471834 DFNA5O60443 496 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 POLBP06746 335 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 GNAO1P09471 354 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 UGT1A6P19224 532 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 UGT1A4P22310 534 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 FDXRP22570 491 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 UGT1A3P35503 534 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 UGT1A5P35504 534 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 RECQLP46063 649 aaPredicted RBP5.33□□□□□ -1.56
SYNE1-220ENST00000471834 EEF1DP3Q658K8 133 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 DNAJC14Q6Y2X3 702 aaPredicted RBP5.33□□□□□ -1.56
SYNE1-220ENST00000471834 CCDC71Q8IV32 467 aaPredicted RBP5.33□□□□□ -1.56
SYNE1-220ENST00000471834 CBR4Q8N4T8 237 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 UBTD2Q8WUN7 234 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 PI4K2AQ9BTU6 479 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 FSD1LQ9BXM9 530 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 ALG13Q9NP73 1137 aaKnown RBP5.33□□□□□ -1.56
SYNE1-220ENST00000471834 ZNF358Q9NW07 568 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 SAE1Q9UBE0 346 aaPredicted RBP5.33□□□□□ -1.56
SYNE1-220ENST00000471834 FAM8A1Q9UBU6 413 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 ZNF225Q9UK10 706 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 COL4A6Q14031 1691 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 PTPRFP10586 1907 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 hCG_2014768A0A024R1R8 64 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 TMEM88BA6NKF7 163 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 HSPA4LO95757 839 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 DDOSTP39656 456 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 ARL4AP40617 200 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 SLC15A1P46059 708 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 CLCNKBP51801 687 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 HMGA2P52926 109 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 NKG7Q16617 165 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 SLC10A6Q3KNW5 377 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 SLC25A30Q5SVS4 291 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 LILRB4Q8NHJ6 448 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 HGDQ93099 445 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 CCDC138Q96M89 665 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 CDADC1Q9BWV3 514 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 FAM49AQ9H0Q0 323 aaPredicted RBP5.33□□□□□ -1.56
SYNE1-220ENST00000471834 ZFP14Q9HCL3 533 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms