RNA–Protein interactions for RNA: ENST00000471246.1

UBXN4-207, Transcript of UBX domain protein 4, humanhuman

TSL 3

Gene UBXN4, Length 395 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-207ENST00000471246 HMGCLL1Q8TB92 370 aa1.39□□□□□ -2.19
UBXN4-207ENST00000471246 ZCCHC10Q8TBK6 192 aa1.39□□□□□ -2.19
UBXN4-207ENST00000471246 GRAPLQ8TC17 118 aaPredicted RBP1.39□□□□□ -2.19
UBXN4-207ENST00000471246 HTRA1Q92743 480 aa1.39□□□□□ -2.19
UBXN4-207ENST00000471246 PIGTQ969N2 578 aa1.39□□□□□ -2.19
UBXN4-207ENST00000471246 RHBDF1Q96CC6 855 aa1.39□□□□□ -2.19
UBXN4-207ENST00000471246 ORAI1Q96D31 301 aa1.39□□□□□ -2.19
UBXN4-207ENST00000471246 GRAMD2BQ96HH9 432 aa1.39□□□□□ -2.19
UBXN4-207ENST00000471246 APOPT1Q96IL0 206 aa1.39□□□□□ -2.19
UBXN4-207ENST00000471246 MAELQ96JY0 434 aaKnown RBP1.39□□□□□ -2.19
UBXN4-207ENST00000471246 ZNF354BQ96LW1 612 aa1.39□□□□□ -2.19
UBXN4-207ENST00000471246 SCLT1Q96NL6 688 aa1.39□□□□□ -2.19
UBXN4-207ENST00000471246 QRFPRQ96P65 431 aa1.39□□□□□ -2.19
UBXN4-207ENST00000471246 DUX3Q96PT4 197 aa1.39□□□□□ -2.19
UBXN4-207ENST00000471246 EIF2AK1Q9BQI3 630 aaKnown RBP1.39□□□□□ -2.19
UBXN4-207ENST00000471246 TMEM47Q9BQJ4 181 aa1.39□□□□□ -2.19
UBXN4-207ENST00000471246 LRRC1Q9BTT6 524 aa1.39□□□□□ -2.19
UBXN4-207ENST00000471246 C1QTNF5Q9BXJ0 243 aa1.39□□□□□ -2.19
UBXN4-207ENST00000471246 FKRPQ9H9S5 495 aa1.39□□□□□ -2.19
UBXN4-207ENST00000471246 VEZTQ9HBM0 779 aa1.39□□□□□ -2.19
UBXN4-207ENST00000471246 PPP1R14DQ9NXH3 145 aa1.39□□□□□ -2.19
UBXN4-207ENST00000471246 SAGE1Q9NXZ1 904 aa1.39□□□□□ -2.19
UBXN4-207ENST00000471246 DDX43Q9NXZ2 648 aaKnown RBP1.39□□□□□ -2.19
UBXN4-207ENST00000471246 GGA3Q9NZ52 723 aa1.39□□□□□ -2.19
UBXN4-207ENST00000471246 KCND2Q9NZV8 630 aa1.39□□□□□ -2.19
UBXN4-207ENST00000471246 FAF1Q9UNN5 650 aaPredicted RBP1.39□□□□□ -2.19
UBXN4-207ENST00000471246 CAMK2AQ9UQM7 478 aa1.39□□□□□ -2.19
UBXN4-207ENST00000471246 TP53BP1Q12888 1972 aaPredicted RBP1.39□□□□□ -2.19
UBXN4-207ENST00000471246 PTPRCP08575 1304 aa1.39□□□□□ -2.19
UBXN4-207ENST00000471246 CACNA1FO60840 1977 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 LRRC53A6NM62 1247 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 PMS2P5A8MQ11 134 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 HOXC11O43248 304 aaPredicted RBP1.38□□□□□ -2.19
UBXN4-207ENST00000471246 ZNHIT1O43257 154 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 SPINT2O43291 252 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 SEC31AO94979 1220 aaKnown RBP1.38□□□□□ -2.19
UBXN4-207ENST00000471246 F9P00740 461 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 LDLRP01130 860 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 IGHV4-39P01824 125 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 PRSS1P07477 247 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 FAM106CPP0CH98 169 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 IL7RP16871 459 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 ABCD3P28288 659 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 CPOXP36551 454 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 PAFAH1B1P43034 410 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 CCT5P48643 541 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 HOXA1P49639 335 aaPredicted RBP1.38□□□□□ -2.19
UBXN4-207ENST00000471246 CTCFP49711 727 aaPredicted RBP1.38□□□□□ -2.19
UBXN4-207ENST00000471246 NR0B1P51843 470 aaKnown RBP1.38□□□□□ -2.19
UBXN4-207ENST00000471246 ERVK11-1P61568 191 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 RUNX1T1Q06455 604 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 BIRC3Q13489 604 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 GTF2H2Q13888 395 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 DRAP1Q14919 205 aaPredicted RBP1.38□□□□□ -2.19
UBXN4-207ENST00000471246 FCN2Q15485 313 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 C14orf177Q52M58 125 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 CXorf66Q5JRM2 361 aaPredicted RBP1.38□□□□□ -2.19
UBXN4-207ENST00000471246 PDSS1Q5T2R2 415 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 FAM69AQ5T7M9 428 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 SLC9C2Q5TAH2 1124 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 OR7E24Q6IFN5 339 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 TTI2Q6NXR4 508 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 GTF2H2CQ6P1K8 395 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 ARHGAP11AQ6P4F7 1023 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 FAM171BQ6P995 826 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 BRAT1Q6PJG6 821 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 ZNF704Q6ZNC4 412 aaPredicted RBP1.38□□□□□ -2.19
UBXN4-207ENST00000471246 CACNA2D4Q7Z3S7 1137 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 GPR180Q86V85 440 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 NRROSQ86YC3 692 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 CCDC13Q8IYE1 715 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 BEST3Q8N1M1 668 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 SRBD1Q8N5C6 995 aaKnown RBP1.38□□□□□ -2.19
UBXN4-207ENST00000471246 CNBD1Q8NA66 436 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 KLHDC9Q8NEP7 349 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 OR10V1Q8NGI7 309 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 OR52I2Q8NH67 350 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 OR5R1Q8NH85 324 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 NFKBIDQ8NI38 313 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 FAM76AQ8TAV0 307 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 SLC44A1Q8WWI5 657 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 ST8SIA4Q92187 359 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 TAAR8Q969N4 342 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 ZNF524Q96C55 264 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 RNF125Q96EQ8 232 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 RRNAD1Q96FB5 475 aaKnown RBP1.38□□□□□ -2.19
UBXN4-207ENST00000471246 LINGO1Q96FE5 620 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 PPP1R13BQ96KQ4 1090 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 NEURL2Q9BR09 285 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 PCGF1Q9BSM1 259 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 POLR3CQ9BUI4 534 aaPredicted RBP1.38□□□□□ -2.19
UBXN4-207ENST00000471246 RBM4Q9BWF3 364 aaKnown RBP1.38□□□□□ -2.19
UBXN4-207ENST00000471246 KIF9Q9HAQ2 790 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 SLC28A3Q9HAS3 691 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 BRF2Q9HAW0 419 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 ACSS1Q9NUB1 689 aaPredicted RBP1.38□□□□□ -2.19
UBXN4-207ENST00000471246 MAP3K20Q9NYL2 800 aaKnown RBP1.38□□□□□ -2.19
UBXN4-207ENST00000471246 ZKSCAN7Q9P0L1 754 aaPredicted RBP1.38□□□□□ -2.19
UBXN4-207ENST00000471246 LUZP4Q9P127 313 aa1.38□□□□□ -2.19
UBXN4-207ENST00000471246 ABI3Q9P2A4 366 aa1.38□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms