RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 POLMQ9NP87 494 aaPredicted RBP8.69□□□□□ -1.02
HPS4-209ENST00000466781 SPAG4Q9NPE6 437 aa8.69□□□□□ -1.02
HPS4-209ENST00000466781 DUS2Q9NX74 493 aaKnown RBP8.69□□□□□ -1.02
HPS4-209ENST00000466781 SSR3Q9UNL2 185 aa8.69□□□□□ -1.02
HPS4-209ENST00000466781 ERVW-1Q9UQF0 538 aa8.69□□□□□ -1.02
HPS4-209ENST00000466781 EFR3BQ9Y2G0 817 aa8.69□□□□□ -1.02
HPS4-209ENST00000466781 COL1A1P02452 1464 aaPredicted RBP8.69□□□□□ -1.02
HPS4-209ENST00000466781 CRYBG1Q9Y4K1 1723 aa8.69□□□□□ -1.02
HPS4-209ENST00000466781 A0A1W2PQH9 124 aa8.69□□□□□ -1.02
HPS4-209ENST00000466781 B4GALT5O43286 388 aa8.69□□□□□ -1.02
HPS4-209ENST00000466781 TPD52L2O43399 206 aaKnown RBP8.69□□□□□ -1.02
HPS4-209ENST00000466781 TNFRSF21O75509 655 aa8.69□□□□□ -1.02
HPS4-209ENST00000466781 OR1D2P34982 312 aa8.69□□□□□ -1.02
HPS4-209ENST00000466781 BRMS1LQ5PSV4 323 aa8.69□□□□□ -1.02
HPS4-209ENST00000466781 CCNYL2Q5T2Q4 361 aa8.69□□□□□ -1.02
HPS4-209ENST00000466781 BROXQ5VW32 411 aa8.69□□□□□ -1.02
HPS4-209ENST00000466781 KBTBD8Q8NFY9 601 aa8.69□□□□□ -1.02
HPS4-209ENST00000466781 ACAT2Q9BWD1 397 aa8.69□□□□□ -1.02
HPS4-209ENST00000466781 AGXT2Q9BYV1 514 aa8.69□□□□□ -1.02
HPS4-209ENST00000466781 DNAJC18Q9H819 358 aa8.69□□□□□ -1.02
HPS4-209ENST00000466781 SRRDQ9UH36 339 aa8.69□□□□□ -1.02
HPS4-209ENST00000466781 RGPD2P0DJD1 1756 aa8.69□□□□□ -1.02
HPS4-209ENST00000466781 LRRC37A3O60309 1634 aa8.69□□□□□ -1.02
HPS4-209ENST00000466781 RGSL1A5PLK6 1076 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 SUV39H1O43463 412 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 CHP2O43745 196 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 AVPR1BP47901 424 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 CCR3P51677 355 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 GRSF1Q12849 480 aaKnown RBP eCLIP8.68□□□□□ -1.02
HPS4-209ENST00000466781 BNIP2Q12982 314 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 MAMLD1Q13495 774 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 RAB30Q15771 203 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 ETNPPLQ8TBG4 499 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 KCTD4Q8WVF5 259 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 OR52E6Q96RD3 313 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 CREBZFQ9NS37 354 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 OSER1Q9NX31 292 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 GLYATL1P3A0A0U1RQE8 302 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 IFNA6P05013 189 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 GLI1P08151 1106 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 PIRTP0C851 137 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 SLC26A3P40879 764 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 DNASE1L1P49184 302 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 PTPN5P54829 565 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 MRPS5P82675 430 aaKnown RBP8.68□□□□□ -1.02
HPS4-209ENST00000466781 LAPTM5Q13571 262 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 LARS2Q15031 903 aaKnown RBP8.68□□□□□ -1.02
HPS4-209ENST00000466781 NRF1Q16656 503 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 INAVAQ3KP66 663 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 ARSJQ5FYB0 599 aaPredicted RBP8.68□□□□□ -1.02
HPS4-209ENST00000466781 TMC3Q7Z5M5 1100 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 C2orf73Q8N5S3 287 aaPredicted RBP8.68□□□□□ -1.02
HPS4-209ENST00000466781 OR6K2Q8NGY2 324 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 VANGL1Q8TAA9 524 aaPredicted RBP8.68□□□□□ -1.02
HPS4-209ENST00000466781 FCRL4Q96PJ5 515 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 ZNF670Q9BS34 389 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 DNAJC11Q9NVH1 559 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 C3orf18Q9UK00 162 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 MGAT4AQ9UM21 535 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 DHRS7Q9Y394 339 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 SAMHD1Q9Y3Z3 626 aaKnown RBP8.68□□□□□ -1.02
HPS4-209ENST00000466781 C2CD2Q9Y426 696 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 RIPK3Q9Y572 518 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 LRP6O75581 1613 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 C22orf31O95567 290 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 PRNPP04156 253 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 VARSP26640 1264 aaKnown RBP8.68□□□□□ -1.02
HPS4-209ENST00000466781 CCND3P30281 292 aaPredicted RBP8.68□□□□□ -1.02
HPS4-209ENST00000466781 CASRP41180 1078 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 GRM5P41594 1212 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 VBP1P61758 197 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 CDK18Q07002 472 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 CPSF6Q16630 551 aaKnown RBP eCLIP8.68□□□□□ -1.02
HPS4-209ENST00000466781 ULK3Q6PHR2 472 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 SCIMPQ6UWF3 145 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 ZNF730Q6ZMV8 503 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 ARHGAP36Q6ZRI8 547 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 FAM35AQ86V20 835 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 PIK3C3Q8NEB9 887 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 PIH1D2Q8WWB5 315 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 RIT1Q92963 219 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 SLC38A3Q99624 504 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 CDT1Q9H211 546 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 PLEKHA1Q9HB21 404 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 KCTD5Q9NXV2 234 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 IKZF2Q9UKS7 526 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 CNTNAP1P78357 1384 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 RGPD5Q99666 1765 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 CCDC162PA2VCL2 907 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 ACRP10323 421 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 GOT1P17174 413 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 AIF1P55008 147 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 CCL14Q16627 93 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 PIK3R6Q5UE93 754 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 FNIP1Q8TF40 1166 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 ANKRD7Q92527 254 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 POP5Q969H6 163 aaKnown RBP8.68□□□□□ -1.02
HPS4-209ENST00000466781 PTCD3Q96EY7 689 aaKnown RBP8.68□□□□□ -1.02
HPS4-209ENST00000466781 SAR1AQ9NR31 198 aa8.68□□□□□ -1.02
HPS4-209ENST00000466781 BLOC1S4Q9NUP1 217 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms