RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 TRAF2Q12933 501 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 STYXQ8WUJ0 223 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 TUBGCP5Q96RT8 1024 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 FAM192AQ9GZU8 254 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 FBRSL1Q9HCM7 1045 aaKnown RBP11.6□□□□□ -0.55
NPHP4-204ENST00000460696 OPTCQ9UBM4 332 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 GIMAP2Q9UG22 337 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 FKBPLQ9UIM3 349 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 GABRDO14764 452 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 PIP5K1BO14986 540 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 NPHS1O60500 1241 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 SORBS2O94875 1100 aaKnown RBP11.6□□□□□ -0.55
NPHP4-204ENST00000460696 PARNO95453 639 aaKnown RBP11.6□□□□□ -0.55
NPHP4-204ENST00000460696 RANBP1P43487 201 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 MAPK10P53779 464 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 SEMG2Q02383 582 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 USP41Q3LFD5 358 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 ZIK1Q3SY52 487 aaPredicted RBP11.6□□□□□ -0.55
NPHP4-204ENST00000460696 C16orf87Q6PH81 154 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 PAQR3Q6TCH7 311 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 GPR141Q7Z602 305 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 SPPL2CQ8IUH8 684 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 ACVR1CQ8NER5 493 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 C2orf49Q9BVC5 232 aaPredicted RBP11.6□□□□□ -0.55
NPHP4-204ENST00000460696 GJD2Q9UKL4 321 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 MYRFQ9Y2G1 1151 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 LIN7AO14910 233 aaPredicted RBP11.6□□□□□ -0.55
NPHP4-204ENST00000460696 AURKAO14965 403 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 PBLDP30039 288 aaPredicted RBP11.6□□□□□ -0.55
NPHP4-204ENST00000460696 PRDX6P30041 224 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 SATB1Q01826 763 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 CLCQ05315 142 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 SCAPQ12770 1279 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 MS4A13Q5J8X5 152 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 PRMT9Q6P2P2 845 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 LPCAT2Q7L5N7 544 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 SERINC5Q86VE9 423 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 FBXO30Q8TB52 745 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 BRSK1Q8TDC3 778 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 FUBP3Q96I24 572 aaKnown RBP eCLIP11.6□□□□□ -0.55
NPHP4-204ENST00000460696 C1orf21Q9H246 121 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 ARL15Q9NXU5 204 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 PNMA8BQ9ULN7 279 aaPredicted RBP11.6□□□□□ -0.55
NPHP4-204ENST00000460696 NME7Q9Y5B8 376 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 DOCK5Q9H7D0 1870 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 EP300Q09472 2414 aaPredicted RBP11.6□□□□□ -0.55
NPHP4-204ENST00000460696 DHRS12A0PJE2 317 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 TBC1D4O60343 1298 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 MAFKO60675 156 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 DNAJA2O60884 412 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 CLDN11O75508 207 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 ZNF682O95780 498 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 CYBAP13498 195 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 POLD2P49005 469 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 GATMP50440 423 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 ATP6V0D1P61421 351 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 CPSF6Q16630 551 aaKnown RBP eCLIP11.6□□□□□ -0.55
NPHP4-204ENST00000460696 KIAA0319Q5VV43 1072 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 REP15Q6BDI9 236 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 TTC23LQ6PF05 361 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 DET1Q7L5Y6 550 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 CPNE9Q8IYJ1 553 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 PPM1MQ96MI6 270 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 EMCNQ9ULC0 261 aa11.6□□□□□ -0.55
NPHP4-204ENST00000460696 A0A088AWK7 358 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 RPL38P63173 70 aaKnown RBP11.59□□□□□ -0.55
NPHP4-204ENST00000460696 PRKG2Q13237 762 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 MSANTD2Q6P1R3 559 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 YAF2Q8IY57 180 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 CENPLQ8N0S6 344 aaPredicted RBP11.59□□□□□ -0.55
NPHP4-204ENST00000460696 LRTOMTQ8WZ04 291 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 SH3KBP1Q96B97 665 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 FAM120BQ96EK7 910 aaKnown RBP11.59□□□□□ -0.55
NPHP4-204ENST00000460696 FAM126AQ9BYI3 521 aaPredicted RBP11.59□□□□□ -0.55
NPHP4-204ENST00000460696 CPSF4O95639 269 aaKnown RBP11.59□□□□□ -0.55
NPHP4-204ENST00000460696 MLYCDO95822 493 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 EOMESO95936 686 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 CTGFP29279 349 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 DLG1Q12959 904 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 TRIM25Q14258 630 aaKnown RBP11.59□□□□□ -0.55
NPHP4-204ENST00000460696 NEDD8Q15843 81 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 MORN1Q5T089 497 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 CLVS1Q8IUQ0 354 aaPredicted RBP11.59□□□□□ -0.55
NPHP4-204ENST00000460696 DHRSXQ8N5I4 330 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 LINC01465Q8N7H1 131 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.59□□□□□ -0.55
NPHP4-204ENST00000460696 CDKN2AIPNLQ96HQ2 116 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 MRGPRX2Q96LB1 330 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 SAGE1Q9NXZ1 904 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 LMCD1Q9NZU5 365 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 LRRC37AA6NMS7 1700 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 PER2O15055 1255 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 KRT6AP02538 564 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 KRT6BP04259 564 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 KRT6CP48668 564 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 ST8SIA6P61647 398 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 NRG1Q02297 640 aaPredicted RBP11.59□□□□□ -0.55
NPHP4-204ENST00000460696 VAC14Q08AM6 782 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 PPP1R3AQ16821 1122 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 POM121L1PQ3SYA9 428 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms