RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 LHX3Q9UBR4 397 aa12.17□□□□□ -0.46
PTPRF-208ENST00000437607 FAM153AQ9UHL3 310 aa12.17□□□□□ -0.46
PTPRF-208ENST00000437607 RAB21Q9UL25 225 aa12.17□□□□□ -0.46
PTPRF-208ENST00000437607 NFU1Q9UMS0 254 aa12.17□□□□□ -0.46
PTPRF-208ENST00000437607 AAR2Q9Y312 384 aaKnown RBP12.17□□□□□ -0.46
PTPRF-208ENST00000437607 FARP1Q9Y4F1 1045 aaPredicted RBP12.17□□□□□ -0.46
PTPRF-208ENST00000437607 WASF2Q9Y6W5 498 aa12.17□□□□□ -0.46
PTPRF-208ENST00000437607 ARHGEF17Q96PE2 2063 aaPredicted RBP12.17□□□□□ -0.46
PTPRF-208ENST00000437607 CCDC151A5D8V7 595 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 LEFTY1O75610 366 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 AP2A1O95782 977 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 MPOP05164 745 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 IVDP26440 423 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 AKT2P31751 481 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 CD86P42081 329 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 MAGEA6P43360 314 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 RECQLP46063 649 aaPredicted RBP12.16□□□□□ -0.46
PTPRF-208ENST00000437607 ARL4CP56559 192 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 AP1S1P61966 158 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 CDK16Q00536 496 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 MPP3Q13368 585 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 BRD3Q15059 726 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 SLC14A2Q15849 920 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 ARSIQ5FYB1 569 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 RALGPS1Q5JS13 557 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 TPRG1LQ5T0D9 272 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 FAM182AQ5T1J6 154 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 ANKRD22Q5VYY1 191 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 ZDHHC24Q6UX98 284 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 DPY19L3Q6ZPD9 716 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 Q6ZSR6 202 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 ERN2Q76MJ5 926 aaKnown RBP12.16□□□□□ -0.46
PTPRF-208ENST00000437607 PGBD5Q8N414 524 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 PCDH20Q8N6Y1 951 aaKnown RBP12.16□□□□□ -0.46
PTPRF-208ENST00000437607 FAM181AQ8N9Y4 354 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 IPMKQ8NFU5 416 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 GRIN3AQ8TCU5 1115 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 ART4Q93070 314 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 NAF1Q96HR8 494 aaKnown RBP12.16□□□□□ -0.46
PTPRF-208ENST00000437607 NUDCD1Q96RS6 583 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 RBM15Q96T37 977 aaKnown RBP eCLIP12.16□□□□□ -0.46
PTPRF-208ENST00000437607 SEMA3CQ99985 751 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 HDAC8Q9BY41 377 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 FOXP3Q9BZS1 431 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 TSPYL1Q9H0U9 437 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 ASCL3Q9NQ33 180 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 NLGN3Q9NZ94 848 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 KLF15Q9UIH9 416 aa12.16□□□□□ -0.46
PTPRF-208ENST00000437607 A0A1W2PNU3 283 aaPredicted RBP12.15□□□□□ -0.46
PTPRF-208ENST00000437607 POM121BA6NF01 834 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 GOLGA8MH3BSY2 632 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 K7ESM1 405 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 SCAMP1O15126 338 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 MUSKO15146 869 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 RAD51BO15315 384 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 LZTS3O60299 673 aaPredicted RBP12.15□□□□□ -0.46
PTPRF-208ENST00000437607 CSO75390 466 aaKnown RBP12.15□□□□□ -0.46
PTPRF-208ENST00000437607 DXOO77932 396 aaKnown RBP12.15□□□□□ -0.46
PTPRF-208ENST00000437607 PCDH8O95206 1070 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 CD160O95971 181 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 GSRP00390 522 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 PRNPP04156 253 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 CES1P23141 567 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 SCNN1BP51168 640 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 PCBP4P57723 403 aaKnown RBP12.15□□□□□ -0.46
PTPRF-208ENST00000437607 SNRPD1P62314 119 aaKnown RBP12.15□□□□□ -0.46
PTPRF-208ENST00000437607 GABREP78334 506 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 FZD2Q14332 565 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 CYTH1Q15438 398 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 TRADDQ15628 312 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 PCSK7Q16549 785 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 HIF1AQ16665 826 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 DNAJC21Q5F1R6 531 aaKnown RBP12.15□□□□□ -0.46
PTPRF-208ENST00000437607 ATXN7L2Q5T6C5 722 aaPredicted RBP12.15□□□□□ -0.46
PTPRF-208ENST00000437607 EMBQ6PCB8 327 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 LINC00523Q86TU6 105 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 CCDC25Q86WR0 208 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 RYBPQ8N488 228 aaPredicted RBP12.15□□□□□ -0.46
PTPRF-208ENST00000437607 PAF1Q8N7H5 531 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 NAT8LQ8N9F0 302 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 ZNF248Q8NDW4 579 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 OR2AP1Q8NGE2 309 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 SPATA22Q8NHS9 363 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 VOPP1Q96AW1 172 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 ISG20Q96AZ6 181 aaKnown RBP12.15□□□□□ -0.46
PTPRF-208ENST00000437607 IFT43Q96FT9 208 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 IMP4Q96G21 291 aaKnown RBP12.15□□□□□ -0.46
PTPRF-208ENST00000437607 OXNAD1Q96HP4 312 aaPredicted RBP12.15□□□□□ -0.46
PTPRF-208ENST00000437607 ZNF578Q96N58 590 aaPredicted RBP12.15□□□□□ -0.46
PTPRF-208ENST00000437607 TBL1YQ9BQ87 522 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 GORASP1Q9BQQ3 440 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 MLPHQ9BV36 600 aaPredicted RBP12.15□□□□□ -0.46
PTPRF-208ENST00000437607 FICDQ9BVA6 458 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 SLC17A9Q9BYT1 436 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 PHACTR1Q9C0D0 580 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 CPNE5Q9HCH3 593 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 XAB2Q9HCS7 855 aaKnown RBP12.15□□□□□ -0.46
PTPRF-208ENST00000437607 ZDHHC18Q9NUE0 388 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 UBP1Q9NZI7 540 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 IL36AQ9UHA7 158 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms