RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 HOPXQ9BPY8 73 aaPredicted RBP11.76□□□□□ -0.53
CD44-209ENST00000433892 TFB2MQ9H5Q4 396 aaKnown RBP11.76□□□□□ -0.53
CD44-209ENST00000433892 ARMC1Q9NVT9 282 aa11.76□□□□□ -0.53
CD44-209ENST00000433892 DUS2Q9NX74 493 aaKnown RBP11.76□□□□□ -0.53
CD44-209ENST00000433892 RNF112Q9ULX5 631 aa11.76□□□□□ -0.53
CD44-209ENST00000433892 NDUFAF1Q9Y375 327 aa11.76□□□□□ -0.53
CD44-209ENST00000433892 TIMM22Q9Y584 194 aa11.76□□□□□ -0.53
CD44-209ENST00000433892 NCF1BA6NI72 391 aaPredicted RBP11.76□□□□□ -0.53
CD44-209ENST00000433892 NCF1CA8MVU1 366 aaPredicted RBP11.76□□□□□ -0.53
CD44-209ENST00000433892 FXYD1O00168 92 aa11.76□□□□□ -0.53
CD44-209ENST00000433892 ADAMTS4O75173 837 aa11.76□□□□□ -0.53
CD44-209ENST00000433892 ASLP04424 464 aa11.76□□□□□ -0.53
CD44-209ENST00000433892 RPLP2P05387 115 aaKnown RBP11.76□□□□□ -0.53
CD44-209ENST00000433892 SERPINF2P08697 491 aa11.76□□□□□ -0.53
CD44-209ENST00000433892 NCF1P14598 390 aaPredicted RBP11.76□□□□□ -0.53
CD44-209ENST00000433892 LBPP18428 481 aa11.76□□□□□ -0.53
CD44-209ENST00000433892 RPL10P27635 214 aaKnown RBP11.76□□□□□ -0.53
CD44-209ENST00000433892 PCSK6P29122 969 aa11.76□□□□□ -0.53
CD44-209ENST00000433892 APLP1P51693 650 aa11.76□□□□□ -0.53
CD44-209ENST00000433892 DSC1Q08554 894 aa11.76□□□□□ -0.53
CD44-209ENST00000433892 LCP2Q13094 533 aa11.76□□□□□ -0.53
CD44-209ENST00000433892 LAMB3Q13751 1172 aa11.76□□□□□ -0.53
CD44-209ENST00000433892 TSNQ15631 228 aaKnown RBP11.76□□□□□ -0.53
CD44-209ENST00000433892 CTXN3Q4LDR2 81 aa11.76□□□□□ -0.53
CD44-209ENST00000433892 SETMARQ53H47 684 aaPredicted RBP11.76□□□□□ -0.53
CD44-209ENST00000433892 NHSL2Q5HYW2 709 aa11.76□□□□□ -0.53
CD44-209ENST00000433892 TBCELQ5QJ74 424 aa11.76□□□□□ -0.53
CD44-209ENST00000433892 ERMP1Q7Z2K6 904 aa11.76□□□□□ -0.53
CD44-209ENST00000433892 FBXO39Q8N4B4 442 aa11.76□□□□□ -0.53
CD44-209ENST00000433892 ANKFN1Q8N957 763 aa11.76□□□□□ -0.53
CD44-209ENST00000433892 SMIM14Q96QK8 99 aa11.76□□□□□ -0.53
CD44-209ENST00000433892 CCSER2Q9H7U1 834 aa11.76□□□□□ -0.53
CD44-209ENST00000433892 SDR39U1Q9NRG7 319 aaPredicted RBP11.76□□□□□ -0.53
CD44-209ENST00000433892 CCM2LQ9NUG4 571 aaPredicted RBP11.76□□□□□ -0.53
CD44-209ENST00000433892 OLAHQ9NV23 265 aa11.76□□□□□ -0.53
CD44-209ENST00000433892 CMTM6Q9NX76 183 aa11.76□□□□□ -0.53
CD44-209ENST00000433892 ABCD2Q9UBJ2 740 aa11.76□□□□□ -0.53
CD44-209ENST00000433892 PADI4Q9UM07 663 aa11.76□□□□□ -0.53
CD44-209ENST00000433892 MED16Q9Y2X0 877 aa11.76□□□□□ -0.53
CD44-209ENST00000433892 SPO11Q9Y5K1 396 aa11.76□□□□□ -0.53
CD44-209ENST00000433892 DHRS12A0PJE2 317 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 ARHGAP10A1A4S6 786 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 ANKRD33BA6NCL7 494 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 PDLIM1O00151 329 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 KERAO60938 352 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 CRCPO75575 148 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 EPOP01588 193 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 BMP2P12643 396 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 HOXB8P17481 243 aaPredicted RBP11.75□□□□□ -0.53
CD44-209ENST00000433892 SLC6A2P23975 617 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 PRDX3P30048 256 aaKnown RBP11.75□□□□□ -0.53
CD44-209ENST00000433892 SOX11P35716 441 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 KCNQ1P51787 676 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 YBEYP58557 167 aaPredicted RBP11.75□□□□□ -0.53
CD44-209ENST00000433892 PLOD1Q02809 727 aaPredicted RBP11.75□□□□□ -0.53
CD44-209ENST00000433892 MFSD14CQ5VZR4 134 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 PPP4R4Q6NUP7 873 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 RASAL3Q86YV0 1011 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 COLGALT2Q8IYK4 626 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 CBR4Q8N4T8 237 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 MINDY1Q8N5J2 469 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 STAG3L4Q8TBR4 150 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 PEX13Q92968 403 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 KIAA1191Q96A73 305 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 VPS33AQ96AX1 596 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 TMIGD2Q96BF3 282 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 LRRC58Q96CX6 371 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 EXOC2Q96KP1 924 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 TEX37Q96LM6 180 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 NSMCE3Q96MG7 304 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 SEPT5Q99719 369 aaPredicted RBP11.75□□□□□ -0.53
CD44-209ENST00000433892 ARHGAP39Q9C0H5 1083 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 POPDC3Q9HBV1 291 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 TLR8Q9NR97 1041 aaKnown RBP11.75□□□□□ -0.53
CD44-209ENST00000433892 HACD3Q9P035 362 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 MYRFQ9Y2G1 1151 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 CEPT1Q9Y6K0 416 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 TANC1Q9C0D5 1861 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 MANSC4A6NHS7 340 aaPredicted RBP11.75□□□□□ -0.53
CD44-209ENST00000433892 H3BNH8 94 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 CDC7O00311 574 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 ECI2O75521 394 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 GNAO1P09471 354 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 CDH2P19022 906 aaPredicted RBP11.75□□□□□ -0.53
CD44-209ENST00000433892 OGNP20774 298 aaKnown RBP11.75□□□□□ -0.53
CD44-209ENST00000433892 OXTRP30559 389 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 SLC5A2P31639 672 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 CDKN1CP49918 316 aaPredicted RBP11.75□□□□□ -0.53
CD44-209ENST00000433892 AGTR2P50052 363 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 RPS6KA3P51812 740 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 ATP6V0D1P61421 351 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 TYSND1Q2T9J0 566 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 IFNEQ86WN2 208 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 IFNL1Q8IU54 200 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 LGI2Q8N0V4 545 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 FAM47BQ8NA70 645 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 OR7D4Q8NG98 312 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 OR4K2Q8NGD2 314 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 DNAJB14Q8TBM8 379 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 ZUFSPQ96AP4 578 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms