RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 SLC37A2Q8TED4 501 aa14.43□□□□□ -0.1
SDC1-204ENST00000429035 RIOK2Q9BVS4 552 aaKnown RBP14.43□□□□□ -0.1
SDC1-204ENST00000429035 TDRD1Q9BXT4 1180 aaKnown RBP14.43□□□□□ -0.1
SDC1-204ENST00000429035 RBM22Q9NW64 420 aaKnown RBP eCLIP14.43□□□□□ -0.1
SDC1-204ENST00000429035 RCOR3Q9P2K3 495 aaPredicted RBP14.43□□□□□ -0.1
SDC1-204ENST00000429035 PRKAB1Q9Y478 270 aa14.43□□□□□ -0.1
SDC1-204ENST00000429035 EFCAB7A8K855 629 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 A8MU76 341 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 DUX1O43812 170 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 ATP1A1P05023 1023 aaKnown RBP14.42□□□□□ -0.1
SDC1-204ENST00000429035 SERPING1P05155 500 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 HLA-DQB2P05538 268 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 PYGLP06737 847 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 THRAP10827 490 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 FGF3P11487 239 aaPredicted RBP14.42□□□□□ -0.1
SDC1-204ENST00000429035 ZNF30P17039 623 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 GPR3P46089 330 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 STC1P52823 247 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 LIMK2P53671 638 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 FANCCQ00597 558 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 DPTQ07507 201 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 GALNT2Q10471 571 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 NFATC2Q13469 925 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 DPYSL3Q14195 570 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 PYCR3Q53H96 274 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 FIGNQ5HY92 759 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 HGSNATQ68CP4 663 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 CHST15Q7LFX5 561 aaPredicted RBP14.42□□□□□ -0.1
SDC1-204ENST00000429035 TEX26Q8N6G2 289 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 KCTD6Q8NC69 237 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 OR4D9Q8NGE8 314 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 OR10G6Q8NH81 332 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 HTR3CQ8WXA8 447 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 TAAR9Q96RI9 348 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 STN1Q9H668 368 aaKnown RBP14.42□□□□□ -0.1
SDC1-204ENST00000429035 CLMPQ9H6B4 373 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 SLC39A1Q9NY26 324 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 CTTNBP2NLQ9P2B4 639 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 ZNHIT2Q9UHR6 403 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 DNPEPQ9ULA0 475 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 KCNK6Q9Y257 313 aa14.42□□□□□ -0.1
SDC1-204ENST00000429035 BZW2Q9Y6E2 419 aaKnown RBP14.42□□□□□ -0.1
SDC1-204ENST00000429035 A0A087X0T9 212 aa14.41□□□□□ -0.1
SDC1-204ENST00000429035 C1orf232A0A0U1RR37 186 aa14.41□□□□□ -0.1
SDC1-204ENST00000429035 FZD6O60353 706 aa14.41□□□□□ -0.1
SDC1-204ENST00000429035 SNX2O60749 519 aa14.41□□□□□ -0.1
SDC1-204ENST00000429035 CLDN7O95471 211 aa14.41□□□□□ -0.1
SDC1-204ENST00000429035 ITGB2P05107 769 aa14.41□□□□□ -0.1
SDC1-204ENST00000429035 CYP1A2P05177 515 aa14.41□□□□□ -0.1
SDC1-204ENST00000429035 FAM228BP0C875 321 aa14.41□□□□□ -0.1
SDC1-204ENST00000429035 ACP5P13686 325 aa14.41□□□□□ -0.1
SDC1-204ENST00000429035 PTSQ03393 145 aa14.41□□□□□ -0.1
SDC1-204ENST00000429035 TRA2AQ13595 282 aaKnown RBP eCLIP14.41□□□□□ -0.1
SDC1-204ENST00000429035 NR1I3Q14994 352 aa14.41□□□□□ -0.1
SDC1-204ENST00000429035 TBR1Q16650 682 aa14.41□□□□□ -0.1
SDC1-204ENST00000429035 IFI16Q16666 785 aaKnown RBP14.41□□□□□ -0.1
SDC1-204ENST00000429035 CLPPQ16740 277 aaPredicted RBP14.41□□□□□ -0.1
SDC1-204ENST00000429035 ATP13A4Q4VNC1 1196 aa14.41□□□□□ -0.1
SDC1-204ENST00000429035 ZNF765Q7L2R6 523 aa14.41□□□□□ -0.1
SDC1-204ENST00000429035 LUZP1Q86V48 1076 aa14.41□□□□□ -0.1
SDC1-204ENST00000429035 DTX1Q86Y01 620 aa14.41□□□□□ -0.1
SDC1-204ENST00000429035 CBARPQ8N350 705 aaPredicted RBP14.41□□□□□ -0.1
SDC1-204ENST00000429035 CCNYQ8ND76 341 aa14.41□□□□□ -0.1
SDC1-204ENST00000429035 ZNF830Q96NB3 372 aaPredicted RBP14.41□□□□□ -0.1
SDC1-204ENST00000429035 PCDH9Q9HC56 1237 aa14.41□□□□□ -0.1
SDC1-204ENST00000429035 KLHL3Q9UH77 587 aa14.41□□□□□ -0.1
SDC1-204ENST00000429035 PPIL1Q9Y3C6 166 aa14.41□□□□□ -0.1
SDC1-204ENST00000429035 B3GALT1Q9Y5Z6 326 aa14.41□□□□□ -0.1
SDC1-204ENST00000429035 OAS3Q9Y6K5 1087 aaKnown RBP14.41□□□□□ -0.1
SDC1-204ENST00000429035 ZNF106Q9H2Y7 1883 aaKnown RBP14.41□□□□□ -0.1
SDC1-204ENST00000429035 FLNBO75369 2602 aaKnown RBP14.41□□□□□ -0.1
SDC1-204ENST00000429035 SPTA1P02549 2419 aa14.4□□□□□ -0.1
SDC1-204ENST00000429035 A0A1W2PQJ5 194 aa14.4□□□□□ -0.1
SDC1-204ENST00000429035 MATN3O15232 486 aa14.4□□□□□ -0.1
SDC1-204ENST00000429035 EML2O95834 649 aa14.4□□□□□ -0.1
SDC1-204ENST00000429035 UBASH3AP57075 661 aa14.4□□□□□ -0.1
SDC1-204ENST00000429035 GPLD1P80108 840 aa14.4□□□□□ -0.1
SDC1-204ENST00000429035 HHEXQ03014 270 aa14.4□□□□□ -0.1
SDC1-204ENST00000429035 KCNC4Q03721 635 aa14.4□□□□□ -0.1
SDC1-204ENST00000429035 GBE1Q04446 702 aa14.4□□□□□ -0.1
SDC1-204ENST00000429035 NIPAL4Q0D2K0 466 aa14.4□□□□□ -0.1
SDC1-204ENST00000429035 LRP8Q14114 963 aa14.4□□□□□ -0.1
SDC1-204ENST00000429035 IQCB1Q15051 598 aa14.4□□□□□ -0.1
SDC1-204ENST00000429035 PAFAH1B3Q15102 231 aaKnown RBP14.4□□□□□ -0.1
SDC1-204ENST00000429035 ANKRD20A8PQ5CZ79 823 aa14.4□□□□□ -0.1
SDC1-204ENST00000429035 ALS2CLQ60I27 953 aa14.4□□□□□ -0.1
SDC1-204ENST00000429035 ALKBH5Q6P6C2 394 aaKnown RBP14.4□□□□□ -0.1
SDC1-204ENST00000429035 LRRC49Q8IUZ0 686 aa14.4□□□□□ -0.1
SDC1-204ENST00000429035 CACNA2D3Q8IZS8 1091 aa14.4□□□□□ -0.1
SDC1-204ENST00000429035 EXD1Q8NHP7 514 aa14.4□□□□□ -0.1
SDC1-204ENST00000429035 MAML1Q92585 1016 aa14.4□□□□□ -0.1
SDC1-204ENST00000429035 DPYSL5Q9BPU6 564 aa14.4□□□□□ -0.1
SDC1-204ENST00000429035 ZNF670Q9BS34 389 aa14.4□□□□□ -0.1
SDC1-204ENST00000429035 OSGEPL1Q9H4B0 414 aa14.4□□□□□ -0.1
SDC1-204ENST00000429035 CBX8Q9HC52 389 aa14.4□□□□□ -0.1
SDC1-204ENST00000429035 OCIAD1Q9NX40 245 aa14.4□□□□□ -0.1
SDC1-204ENST00000429035 PKD2L2Q9NZM6 624 aa14.4□□□□□ -0.1
SDC1-204ENST00000429035 PCYT1BQ9Y5K3 369 aaPredicted RBP14.4□□□□□ -0.1
SDC1-204ENST00000429035 SETXQ7Z333 2677 aaKnown RBP14.39□□□□□ -0.11
SDC1-204ENST00000429035 SYCE3A1L190 88 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms