RNA–Protein interactions for RNA: ENST00000409769.6

CLK1-203, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 1,192 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-203ENST00000409769 MIB2Q96AX9 1013 aa4.53□□□□□ -1.68
CLK1-203ENST00000409769 ZNF419Q96HQ0 510 aaPredicted RBP4.53□□□□□ -1.68
CLK1-203ENST00000409769 SCLT1Q96NL6 688 aa4.53□□□□□ -1.68
CLK1-203ENST00000409769 REEP2Q9BRK0 252 aa4.53□□□□□ -1.68
CLK1-203ENST00000409769 UBAC1Q9BSL1 405 aa4.53□□□□□ -1.68
CLK1-203ENST00000409769 LUZP4Q9P127 313 aa4.53□□□□□ -1.68
CLK1-203ENST00000409769 HDAC6Q9UBN7 1215 aa4.53□□□□□ -1.68
CLK1-203ENST00000409769 SEL1LQ9UBV2 794 aa4.53□□□□□ -1.68
CLK1-203ENST00000409769 SUFUQ9UMX1 484 aa4.53□□□□□ -1.68
CLK1-203ENST00000409769 DHDHQ9UQ10 334 aa4.53□□□□□ -1.68
CLK1-203ENST00000409769 SMCHD1A6NHR9 2005 aa4.53□□□□□ -1.68
CLK1-203ENST00000409769 CKAP5Q14008 2032 aa4.53□□□□□ -1.68
CLK1-203ENST00000409769 LOC285556D6RIA3 1793 aa4.53□□□□□ -1.69
CLK1-203ENST00000409769 A0A0A0MQY5 61 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 KLF18A0A0U1RQI7 1052 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.52□□□□□ -1.69
CLK1-203ENST00000409769 ERICH2A1L162 156 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 FAM90A7PA6NKC0 464 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 FAM90A22PA8MWA6 464 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 FAM90A12PA8MX19 464 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 FAM90A23PA8MXZ1 464 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 STRNO43815 780 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 HBP1O60381 514 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 CHRNB2P17787 502 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 SELENOVP59797 346 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 TLE2Q04725 743 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 IL13RA2Q14627 380 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 PPP2R5BQ15173 497 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 SYTL3Q4VX76 610 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 ZNF628Q5EBL2 1059 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 TMEM179Q6ZVK1 233 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 SERPINA11Q86U17 422 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 TRIM74Q86UV6 250 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 TRIM73Q86UV7 250 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 SPATA2LQ8IUW3 424 aaPredicted RBP4.52□□□□□ -1.69
CLK1-203ENST00000409769 CPOQ8IVL8 374 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 CCDC83Q8IWF9 413 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 FAM217AQ8IXS0 508 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 ZMIZ2Q8NF64 920 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 DCPSQ96C86 337 aaKnown RBP4.52□□□□□ -1.69
CLK1-203ENST00000409769 URB1-AS1Q96HZ7 61 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 TMEM47Q9BQJ4 181 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 CTDSP1Q9GZU7 261 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 ISCUQ9H1K1 167 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 ACAD9Q9H845 621 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 TTC12Q9H892 705 aaPredicted RBP4.52□□□□□ -1.69
CLK1-203ENST00000409769 RIC8AQ9NPQ8 531 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 CD93Q9NPY3 652 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 TLR8Q9NR97 1041 aaKnown RBP4.52□□□□□ -1.69
CLK1-203ENST00000409769 HIF1ANQ9NWT6 349 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 PLK2Q9NYY3 685 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 NYAP2Q9P242 653 aa4.52□□□□□ -1.69
CLK1-203ENST00000409769 A0A1W2PRG0 241 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 CCDC69A6NI79 296 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 ZBTB43O43298 467 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 SERPINC1P01008 464 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 GH2P01242 217 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 ASNSP08243 561 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 MMP3P08254 477 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 CALM1P0DP23 149 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 CALM2P0DP24 149 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 CALM3P0DP25 149 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 PDHBP11177 359 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 TOP1P11387 765 aaKnown RBP4.51□□□□□ -1.69
CLK1-203ENST00000409769 CKMT1AP12532 417 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 EEF2P13639 858 aaKnown RBP4.51□□□□□ -1.69
CLK1-203ENST00000409769 ENO3P13929 434 aaPredicted RBP4.51□□□□□ -1.69
CLK1-203ENST00000409769 FDPSP14324 419 aaKnown RBP4.51□□□□□ -1.69
CLK1-203ENST00000409769 GNLYP22749 145 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 YWHAQP27348 245 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 METAP2P50579 478 aaKnown RBP eCLIP4.51□□□□□ -1.69
CLK1-203ENST00000409769 ZP1P60852 638 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 VAMP2P63027 116 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 UBE3AQ05086 875 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 AP5B1Q2VPB7 878 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 ODF3L2Q3SX64 289 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 SH2D4BQ5SQS7 431 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 C9orf50Q5SZB4 431 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 HEPHL1Q6MZM0 1159 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 TMEM71Q6P5X7 295 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 LRRTM4Q86VH4 590 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 SCYL3Q8IZE3 742 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 NECAB1Q8N987 351 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 LSM14AQ8ND56 463 aaKnown RBP4.51□□□□□ -1.69
CLK1-203ENST00000409769 GMCL1P1Q8NEA9 526 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 C7orf57Q8NEG2 295 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 OR4N2Q8NGD1 307 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 TMEM170AQ8WVE7 144 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 CDCA5Q96FF9 252 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 MED30Q96HR3 178 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 UBXN10Q96LJ8 280 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 LLPHQ9BRT6 129 aaKnown RBP4.51□□□□□ -1.69
CLK1-203ENST00000409769 GLIS2Q9BZE0 524 aaPredicted RBP4.51□□□□□ -1.69
CLK1-203ENST00000409769 STN1Q9H668 368 aaKnown RBP4.51□□□□□ -1.69
CLK1-203ENST00000409769 PLAC1Q9HBJ0 212 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 KRCC1Q9NPI7 259 aaPredicted RBP4.51□□□□□ -1.69
CLK1-203ENST00000409769 RBM28Q9NW13 759 aaKnown RBP4.51□□□□□ -1.69
CLK1-203ENST00000409769 TMEM160Q9NX00 188 aa4.51□□□□□ -1.69
CLK1-203ENST00000409769 FRMD4AQ9P2Q2 1039 aaPredicted RBP4.51□□□□□ -1.69
CLK1-203ENST00000409769 MAD2L2Q9UI95 211 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms