RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 FASLGP48023 281 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 PITPNBP48739 271 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 PDE1AP54750 535 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 ST8SIA6P61647 398 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 TLE3Q04726 772 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 MTAPQ13126 283 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 PPIGQ13427 754 aaKnown RBP eCLIP4.15□□□□□ -1.75
HMGB1-204ENST00000399489 SNX1Q13596 522 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 UBXN2BQ14CS0 331 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 TAZQ16635 292 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 IMMTQ16891 758 aaKnown RBP4.15□□□□□ -1.75
HMGB1-204ENST00000399489 DAB2IPQ5VWQ8 1189 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 SHEQ5VZ18 495 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 MOXD1Q6UVY6 613 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 C16orf89Q6UX73 402 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 ANGPTL8Q6UXH0 198 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 RBM43Q6ZSC3 357 aaKnown RBP4.15□□□□□ -1.75
HMGB1-204ENST00000399489 PTCHD4Q6ZW05 846 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 PSD4Q8NDX1 1056 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 OR52M1Q8NGK5 317 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 CFAP61Q8NHU2 1237 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 MAFAQ8NHW3 353 aaPredicted RBP4.15□□□□□ -1.75
HMGB1-204ENST00000399489 ACTRT2Q8TDY3 377 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 OVCA2Q8WZ82 227 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 SPACA9Q96E40 222 aaPredicted RBP4.15□□□□□ -1.75
HMGB1-204ENST00000399489 ARSGQ96EG1 525 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 TRMT61AQ96FX7 289 aaKnown RBP4.15□□□□□ -1.75
HMGB1-204ENST00000399489 SAMD8Q96LT4 415 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 TCEANC2Q96MN5 208 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 CAMK1GQ96NX5 476 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 PARK7Q99497 189 aaKnown RBP4.15□□□□□ -1.75
HMGB1-204ENST00000399489 ZSWIM1Q9BR11 485 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 AIFM2Q9BRQ8 373 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 TBCDQ9BTW9 1192 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.15□□□□□ -1.75
HMGB1-204ENST00000399489 PDZD7Q9H5P4 517 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 DNAJC11Q9NVH1 559 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 ZNHIT6Q9NWK9 470 aaKnown RBP4.15□□□□□ -1.75
HMGB1-204ENST00000399489 TMOD2Q9NZR1 351 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 FAM30AQ9NZY2 134 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 TRPC4Q9UBN4 977 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 FBXW2Q9UKT8 454 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 PLAGL1Q9UM63 463 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 SLC12A4Q9UP95 1085 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 SALL3Q9BXA9 1300 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 CENPJQ9HC77 1338 aaPredicted RBP4.14□□□□□ -1.75
HMGB1-204ENST00000399489 A0A1B0GVM2 712 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 LINC00854A0A1B0GVQ3 168 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 CTAGE15A4D2H0 777 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 NPIPB13A6NJU9 1138 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 NPIPB5A8MRT5 1133 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 NPIPB4C9JG80 1138 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 POLRMTO00411 1230 aaKnown RBP4.14□□□□□ -1.75
HMGB1-204ENST00000399489 PLRG1O43660 514 aaKnown RBP4.14□□□□□ -1.75
HMGB1-204ENST00000399489 NDUFS3O75489 264 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 WDR47O94967 919 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 CELF2O95319 508 aaKnown RBP4.14□□□□□ -1.75
HMGB1-204ENST00000399489 TGFAP01135 160 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 IGLV2-14P01704 120 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 CYC1P08574 325 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 CTAGE8P0CG41 777 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 KRT5P13647 590 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 MMP9P14780 707 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 ETS1P14921 441 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 ACHEP22303 614 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 GCSHP23434 173 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 CHRNA3P32297 505 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 DHPSP49366 369 aaPredicted RBP4.14□□□□□ -1.75
HMGB1-204ENST00000399489 RARRES1P49788 294 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 NDUFV1P49821 464 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 OCA2Q04671 838 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 SLC20A2Q08357 652 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 KIF5AQ12840 1032 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 CCNIQ14094 377 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 SLC18A3Q16572 532 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 ZSCAN23Q3MJ62 389 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 AKNAD1Q5T1N1 836 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 RIPPLY2Q5TAB7 128 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 ATG9BQ674R7 924 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 B3GNTL1Q67FW5 361 aaPredicted RBP4.14□□□□□ -1.75
HMGB1-204ENST00000399489 PMS2CLQ68D20 193 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 CTR9Q6PD62 1173 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 GJB7Q6PEY0 223 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 LAYNQ6UX15 382 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 NHLRC1Q6VVB1 395 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 TRIM72Q6ZMU5 477 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 CTAGE6Q86UF2 777 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 CTAGE4Q8IX94 777 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 KDM8Q8N371 416 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 GUF1Q8N442 669 aaKnown RBP4.14□□□□□ -1.75
HMGB1-204ENST00000399489 METTL25Q8N6Q8 603 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 SIRT6Q8N6T7 355 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 C11orf65Q8NCR3 313 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 MCUQ8NE86 351 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 OR52E1Q8NGJ3 308 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 LRRC8CQ8TDW0 803 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 PTCD3Q96EY7 689 aaKnown RBP4.14□□□□□ -1.75
HMGB1-204ENST00000399489 C5orf30Q96GV9 206 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 HES6Q96HZ4 224 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 RMDN2Q96LZ7 410 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms