RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 GPR45Q9Y5Y3 372 aa12.66□□□□□ -0.38
SHMT1-205ENST00000395684 OAS3Q9Y6K5 1087 aaKnown RBP12.66□□□□□ -0.38
SHMT1-205ENST00000395684 LOC285095A0A1B0GVY8 99 aa12.66□□□□□ -0.38
SHMT1-205ENST00000395684 TCRBV5S2A0A599 114 aa12.66□□□□□ -0.38
SHMT1-205ENST00000395684 F8W810 466 aa12.66□□□□□ -0.38
SHMT1-205ENST00000395684 CD3EAPO15446 510 aaKnown RBP12.66□□□□□ -0.38
SHMT1-205ENST00000395684 CYP11A1P05108 521 aa12.66□□□□□ -0.38
SHMT1-205ENST00000395684 ITGB1P05556 798 aa12.66□□□□□ -0.38
SHMT1-205ENST00000395684 PRSS56P0CW18 603 aa12.66□□□□□ -0.38
SHMT1-205ENST00000395684 CES1P23141 567 aa12.66□□□□□ -0.38
SHMT1-205ENST00000395684 HOXC8P31273 242 aa12.66□□□□□ -0.38
SHMT1-205ENST00000395684 GSK3BP49841 420 aa12.66□□□□□ -0.38
SHMT1-205ENST00000395684 NRG1Q02297 640 aaPredicted RBP12.66□□□□□ -0.38
SHMT1-205ENST00000395684 PAGE3Q5JUK9 113 aa12.66□□□□□ -0.38
SHMT1-205ENST00000395684 ZNF683Q8IZ20 524 aa12.66□□□□□ -0.38
SHMT1-205ENST00000395684 GOLM1Q8NBJ4 401 aa12.66□□□□□ -0.38
SHMT1-205ENST00000395684 C1orf74Q96LT6 269 aa12.66□□□□□ -0.38
SHMT1-205ENST00000395684 HIPK3Q9H422 1215 aa12.66□□□□□ -0.38
SHMT1-205ENST00000395684 SLAMF8Q9P0V8 285 aa12.66□□□□□ -0.38
SHMT1-205ENST00000395684 IKZF3Q9UKT9 509 aa12.66□□□□□ -0.38
SHMT1-205ENST00000395684 TIMM22Q9Y584 194 aa12.66□□□□□ -0.38
SHMT1-205ENST00000395684 FADS3Q9Y5Q0 445 aa12.66□□□□□ -0.38
SHMT1-205ENST00000395684 CCDC162PA2VCL2 907 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 ZNF701M0R085 212 aaPredicted RBP12.65□□□□□ -0.38
SHMT1-205ENST00000395684 TNPO2O14787 897 aaKnown RBP12.65□□□□□ -0.38
SHMT1-205ENST00000395684 CLOCKO15516 846 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 GLP2RO95838 553 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 CTSHP09668 335 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 ZFP36L2P47974 494 aaKnown RBP12.65□□□□□ -0.38
SHMT1-205ENST00000395684 SUOXP51687 545 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 MRPS6P82932 125 aaKnown RBP12.65□□□□□ -0.38
SHMT1-205ENST00000395684 TNK2Q07912 1038 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 CYBRD1Q53TN4 286 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 TMTC4Q5T4D3 741 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 RAB44Q7Z6P3 723 aaPredicted RBP12.65□□□□□ -0.38
SHMT1-205ENST00000395684 RHEBL1Q8TAI7 183 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 SEPT8Q92599 483 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 TADA1Q96BN2 335 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 ALG2Q9H553 416 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 PLGRKTQ9HBL7 147 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 SEMA4BQ9NPR2 832 aaPredicted RBP12.65□□□□□ -0.38
SHMT1-205ENST00000395684 PRDM5Q9NQX1 630 aaPredicted RBP12.65□□□□□ -0.38
SHMT1-205ENST00000395684 RNF181Q9P0P0 153 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 ZNHIT2Q9UHR6 403 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 USP22Q9UPT9 525 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 SLC45A1Q9Y2W3 748 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 GIT1Q9Y2X7 761 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 A0A1W2PP18 115 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 SH3PXD2BA1X283 911 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 MT-ND1P03886 318 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 GPIP06744 558 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 PIRTP0C851 137 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 IDO1P14902 403 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 PRDX3P30048 256 aaKnown RBP12.65□□□□□ -0.38
SHMT1-205ENST00000395684 RFC2P35250 354 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 CPT1AP50416 773 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 ACVR1Q04771 509 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 CLCQ05315 142 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 CACNB2Q08289 660 aaPredicted RBP12.65□□□□□ -0.38
SHMT1-205ENST00000395684 C16orf72Q14CZ0 275 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 ANKDD1AQ495B1 522 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 FUT11Q495W5 492 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 OVOS1Q6IE37 1185 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 CHST15Q7LFX5 561 aaPredicted RBP12.65□□□□□ -0.38
SHMT1-205ENST00000395684 ZNF354CQ86Y25 554 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 TEX26Q8N6G2 289 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 OR13C4Q8NGS5 318 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 BLOC1S5Q8TDH9 187 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 SNRNP27Q8WVK2 155 aaKnown RBP12.65□□□□□ -0.38
SHMT1-205ENST00000395684 RPF2Q9H7B2 306 aaKnown RBP12.65□□□□□ -0.38
SHMT1-205ENST00000395684 SP110Q9HB58 689 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 CDH7Q9ULB5 785 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 MIA3Q5JRA6 1907 aa12.65□□□□□ -0.38
SHMT1-205ENST00000395684 H3BMQ9 156 aa12.65□□□□□ -0.39
SHMT1-205ENST00000395684 BAIAP3O94812 1187 aa12.65□□□□□ -0.39
SHMT1-205ENST00000395684 OR4Q2P0C623 313 aa12.65□□□□□ -0.39
SHMT1-205ENST00000395684 EEF1DP29692 281 aaKnown RBP12.65□□□□□ -0.39
SHMT1-205ENST00000395684 LIPEQ05469 1076 aa12.65□□□□□ -0.39
SHMT1-205ENST00000395684 NFYCQ13952 458 aa12.65□□□□□ -0.39
SHMT1-205ENST00000395684 RAB39AQ14964 217 aa12.65□□□□□ -0.39
SHMT1-205ENST00000395684 COQ5Q5HYK3 327 aa12.65□□□□□ -0.39
SHMT1-205ENST00000395684 MS4A13Q5J8X5 152 aa12.65□□□□□ -0.39
SHMT1-205ENST00000395684 SDHAF4Q5VUM1 108 aa12.65□□□□□ -0.39
SHMT1-205ENST00000395684 GPR107Q5VW38 600 aa12.65□□□□□ -0.39
SHMT1-205ENST00000395684 CROCCP3Q8IVE0 287 aa12.65□□□□□ -0.39
SHMT1-205ENST00000395684 KIAA2013Q8IYS2 634 aa12.65□□□□□ -0.39
SHMT1-205ENST00000395684 MAGEE2Q8TD90 523 aaPredicted RBP12.65□□□□□ -0.39
SHMT1-205ENST00000395684 ITFG2Q969R8 447 aa12.65□□□□□ -0.39
SHMT1-205ENST00000395684 SLC39A13Q96H72 371 aa12.65□□□□□ -0.39
SHMT1-205ENST00000395684 COG8Q96MW5 612 aa12.65□□□□□ -0.39
SHMT1-205ENST00000395684 TMEM74Q96NL1 305 aa12.65□□□□□ -0.39
SHMT1-205ENST00000395684 TRIM54Q9BYV2 358 aa12.65□□□□□ -0.39
SHMT1-205ENST00000395684 NAA50Q9GZZ1 169 aaKnown RBP12.65□□□□□ -0.39
SHMT1-205ENST00000395684 TFB2MQ9H5Q4 396 aaKnown RBP12.65□□□□□ -0.39
SHMT1-205ENST00000395684 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.65□□□□□ -0.39
SHMT1-205ENST00000395684 M0QZQ0 153 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 SNAP29O95721 258 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 RHOQP17081 205 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 YAP1P46937 504 aaKnown RBP12.64□□□□□ -0.39
SHMT1-205ENST00000395684 FOXM1Q08050 763 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms