RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 DEFB133Q30KQ1 61 aa13.29□□□□□ -0.28
VPS28-202ENST00000377348 N4BP2L1Q5TBK1 243 aaPredicted RBP13.29□□□□□ -0.28
VPS28-202ENST00000377348 GSTA5Q7RTV2 222 aa13.29□□□□□ -0.28
VPS28-202ENST00000377348 RAVER1Q8IY67 606 aaKnown RBP13.29□□□□□ -0.28
VPS28-202ENST00000377348 ATL2Q8NHH9 583 aa13.29□□□□□ -0.28
VPS28-202ENST00000377348 BTN2A2Q8WVV5 523 aa13.29□□□□□ -0.28
VPS28-202ENST00000377348 MAGOHBQ96A72 148 aaKnown RBP13.29□□□□□ -0.28
VPS28-202ENST00000377348 PPP1R2P1Q96PQ5 205 aa13.29□□□□□ -0.28
VPS28-202ENST00000377348 SRPK1Q96SB4 655 aaKnown RBP13.29□□□□□ -0.28
VPS28-202ENST00000377348 NAPGQ99747 312 aaPredicted RBP13.29□□□□□ -0.28
VPS28-202ENST00000377348 FRMD8Q9BZ67 464 aaPredicted RBP13.29□□□□□ -0.28
VPS28-202ENST00000377348 SLC13A1Q9BZW2 595 aa13.29□□□□□ -0.28
VPS28-202ENST00000377348 LRRC40Q9H9A6 602 aa13.29□□□□□ -0.28
VPS28-202ENST00000377348 CYP4F12Q9HCS2 524 aa13.29□□□□□ -0.28
VPS28-202ENST00000377348 ARFGAP3Q9NP61 516 aa13.29□□□□□ -0.28
VPS28-202ENST00000377348 RAB6BQ9NRW1 208 aa13.29□□□□□ -0.28
VPS28-202ENST00000377348 HACD3Q9P035 362 aa13.29□□□□□ -0.28
VPS28-202ENST00000377348 SPASTQ9UBP0 616 aa13.29□□□□□ -0.28
VPS28-202ENST00000377348 FTSJ1Q9UET6 329 aa13.29□□□□□ -0.28
VPS28-202ENST00000377348 CNOT6Q9ULM6 557 aaKnown RBP13.29□□□□□ -0.28
VPS28-202ENST00000377348 ARID1BQ8NFD5 2236 aaPredicted RBP13.29□□□□□ -0.28
VPS28-202ENST00000377348 BPTFQ12830 3046 aa13.29□□□□□ -0.28
VPS28-202ENST00000377348 MED19A0JLT2 244 aaPredicted RBP13.28□□□□□ -0.28
VPS28-202ENST00000377348 PRSS38A1L453 326 aa13.28□□□□□ -0.28
VPS28-202ENST00000377348 TNFP01375 233 aa13.28□□□□□ -0.28
VPS28-202ENST00000377348 MYF5P13349 255 aa13.28□□□□□ -0.28
VPS28-202ENST00000377348 CTSEP14091 401 aa13.28□□□□□ -0.28
VPS28-202ENST00000377348 FDFT1P37268 417 aa13.28□□□□□ -0.28
VPS28-202ENST00000377348 GRIA1P42261 906 aa13.28□□□□□ -0.28
VPS28-202ENST00000377348 BLKP51451 505 aa13.28□□□□□ -0.28
VPS28-202ENST00000377348 TERF1P54274 439 aa13.28□□□□□ -0.28
VPS28-202ENST00000377348 DCDC1P59894 354 aa13.28□□□□□ -0.28
VPS28-202ENST00000377348 TRIP13Q15645 432 aaPredicted RBP13.28□□□□□ -0.28
VPS28-202ENST00000377348 ZNF648Q5T619 568 aaPredicted RBP13.28□□□□□ -0.28
VPS28-202ENST00000377348 PAPD7Q5XG87 772 aaKnown RBP13.28□□□□□ -0.28
VPS28-202ENST00000377348 MARK2Q7KZI7 788 aaKnown RBP13.28□□□□□ -0.28
VPS28-202ENST00000377348 PNPLA1Q8N8W4 532 aa13.28□□□□□ -0.28
VPS28-202ENST00000377348 OR4C6Q8NH72 309 aa13.28□□□□□ -0.28
VPS28-202ENST00000377348 ACTRT1Q8TDG2 376 aa13.28□□□□□ -0.28
VPS28-202ENST00000377348 COX14Q96I36 57 aa13.28□□□□□ -0.28
VPS28-202ENST00000377348 HIC2Q96JB3 615 aa13.28□□□□□ -0.28
VPS28-202ENST00000377348 CNDP2Q96KP4 475 aaKnown RBP13.28□□□□□ -0.28
VPS28-202ENST00000377348 CAPZA3Q96KX2 299 aa13.28□□□□□ -0.28
VPS28-202ENST00000377348 CDC6Q99741 560 aa13.28□□□□□ -0.28
VPS28-202ENST00000377348 CARS2Q9HA77 564 aaKnown RBP13.28□□□□□ -0.28
VPS28-202ENST00000377348 ARNT2Q9HBZ2 717 aa13.28□□□□□ -0.28
VPS28-202ENST00000377348 KCND1Q9NSA2 647 aa13.28□□□□□ -0.28
VPS28-202ENST00000377348 HOMER3Q9NSC5 361 aa13.28□□□□□ -0.28
VPS28-202ENST00000377348 TOR4AQ9NXH8 423 aa13.28□□□□□ -0.28
VPS28-202ENST00000377348 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.28□□□□□ -0.28
VPS28-202ENST00000377348 IL17CQ9P0M4 197 aa13.28□□□□□ -0.28
VPS28-202ENST00000377348 PAK5Q9P286 719 aa13.28□□□□□ -0.28
VPS28-202ENST00000377348 SUFUQ9UMX1 484 aa13.28□□□□□ -0.28
VPS28-202ENST00000377348 SLC17A4Q9Y2C5 497 aa13.28□□□□□ -0.28
VPS28-202ENST00000377348 OAS3Q9Y6K5 1087 aaKnown RBP13.28□□□□□ -0.28
VPS28-202ENST00000377348 DGKBQ9Y6T7 804 aa13.28□□□□□ -0.28
VPS28-202ENST00000377348 LRP4O75096 1905 aa13.27□□□□□ -0.28
VPS28-202ENST00000377348 E7EVH7 732 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 PDE2AO00408 941 aaPredicted RBP13.27□□□□□ -0.29
VPS28-202ENST00000377348 CES2O00748 559 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 TNFRSF10CO14798 259 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 YY2O15391 372 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 GPR39O43194 453 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 ASMTLO95671 621 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 LDOC1O95751 146 aaPredicted RBP13.27□□□□□ -0.29
VPS28-202ENST00000377348 PYGLP06737 847 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 FTH1P19P0C7X4 201 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 TCP1P17987 556 aaKnown RBP13.27□□□□□ -0.29
VPS28-202ENST00000377348 CA5AP35218 305 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 COILP38432 576 aaPredicted RBP13.27□□□□□ -0.29
VPS28-202ENST00000377348 SPAM1P38567 509 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 GNPDA1P46926 289 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 LMAN1P49257 510 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 VPS41P49754 854 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 SEMA5AQ13591 1074 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 TAF1AQ15573 450 aaPredicted RBP13.27□□□□□ -0.29
VPS28-202ENST00000377348 PROX2Q3B8N5 592 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 CCDC157Q569K6 752 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 FAM151BQ6UXP7 276 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 MICALCLQ6ZW33 695 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 SLCO6A1Q86UG4 719 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 TRAM1L1Q8N609 369 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 OR52K1Q8NGK4 314 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 OR13C4Q8NGS5 318 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 CCL4L1Q8NHW4 92 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 BRSK1Q8TDC3 778 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 LRRC45Q96CN5 670 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 NAP1L3Q99457 506 aaPredicted RBP13.27□□□□□ -0.29
VPS28-202ENST00000377348 ZSCAN5AQ9BUG6 496 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 TMEM168Q9H0V1 697 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 IL26Q9NPH9 171 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 RAD18Q9NS91 495 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 NLGN3Q9NZ94 848 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 NFKBIL1Q9UBC1 381 aaPredicted RBP13.27□□□□□ -0.29
VPS28-202ENST00000377348 TMPRSS11EQ9UL52 423 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 PKP3Q9Y446 797 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 PLEKHM1Q9Y4G2 1056 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 PCYT1BQ9Y5K3 369 aaPredicted RBP13.27□□□□□ -0.29
VPS28-202ENST00000377348 CSNK1G3Q9Y6M4 447 aa13.27□□□□□ -0.29
VPS28-202ENST00000377348 SCN8AQ9UQD0 1980 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms