RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 ANAPC2Q9UJX6 822 aa16.33■□□□□ 0.21
SDC4-201ENST00000372733 OAS3Q9Y6K5 1087 aaKnown RBP16.33■□□□□ 0.21
SDC4-201ENST00000372733 MIA3Q5JRA6 1907 aa16.33■□□□□ 0.21
SDC4-201ENST00000372733 J3QRK9 145 aa16.33■□□□□ 0.2
SDC4-201ENST00000372733 SLC7A4O43246 635 aa16.33■□□□□ 0.2
SDC4-201ENST00000372733 PEX11BO96011 259 aa16.33■□□□□ 0.2
SDC4-201ENST00000372733 F2P00734 622 aa16.33■□□□□ 0.2
SDC4-201ENST00000372733 FCGR1AP12314 374 aa16.33■□□□□ 0.2
SDC4-201ENST00000372733 MTHFD2P13995 350 aa16.33■□□□□ 0.2
SDC4-201ENST00000372733 ZNF182P17025 639 aaPredicted RBP16.33■□□□□ 0.2
SDC4-201ENST00000372733 TIAL1Q01085 375 aaKnown RBP eCLIP16.33■□□□□ 0.21e-7■■■■□ 19.4
SDC4-201ENST00000372733 PAGE3Q5JUK9 113 aa16.33■□□□□ 0.2
SDC4-201ENST00000372733 ANKRD26P1Q6NSI1 321 aa16.33■□□□□ 0.2
SDC4-201ENST00000372733 TFAP2DQ7Z6R9 452 aa16.33■□□□□ 0.2
SDC4-201ENST00000372733 GABPB2Q8TAK5 448 aaPredicted RBP16.33■□□□□ 0.2
SDC4-201ENST00000372733 CASP10Q92851 521 aa16.33■□□□□ 0.2
SDC4-201ENST00000372733 LPPQ93052 612 aa16.33■□□□□ 0.2
SDC4-201ENST00000372733 FBXL8Q96CD0 374 aa16.33■□□□□ 0.2
SDC4-201ENST00000372733 CDCA5Q96FF9 252 aa16.33■□□□□ 0.2
SDC4-201ENST00000372733 IMP4Q96G21 291 aaKnown RBP16.33■□□□□ 0.2
SDC4-201ENST00000372733 MFSD1Q9H3U5 465 aa16.33■□□□□ 0.2
SDC4-201ENST00000372733 NOL6Q9H6R4 1146 aaKnown RBP16.33■□□□□ 0.2
SDC4-201ENST00000372733 E9PAM4 449 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 J3KR12 359 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 SNAP91O60641 907 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 CBFA2T3O75081 653 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 MYL3P08590 195 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 C7P10643 843 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 FDXRP22570 491 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 ELK4P28324 431 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 TTKP33981 857 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 GJA5P36382 358 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 EIF4EBP2Q13542 120 aaPredicted RBP16.32■□□□□ 0.2
SDC4-201ENST00000372733 AFMIDQ63HM1 303 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 ZNF354CQ86Y25 554 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 RTL3Q8N8U3 475 aaKnown RBP16.32■□□□□ 0.2
SDC4-201ENST00000372733 COX4I2Q96KJ9 171 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 TRIM54Q9BYV2 358 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 SLAMF8Q9P0V8 285 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 TIMM22Q9Y584 194 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 DNAH12Q6ZR08 3092 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 TRIP12Q14669 1992 aaPredicted RBP16.32■□□□□ 0.2
SDC4-201ENST00000372733 LDLRP01130 860 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 FGF4P08620 206 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 MATN1P21941 496 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 SLC10A7Q0GE19 358 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 SFSWAPQ12872 951 aaKnown RBP16.32■□□□□ 0.2
SDC4-201ENST00000372733 TGFBIQ15582 683 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 ZIK1Q3SY52 487 aaPredicted RBP16.32■□□□□ 0.2
SDC4-201ENST00000372733 OTUD3Q5T2D3 398 aaPredicted RBP16.32■□□□□ 0.2
SDC4-201ENST00000372733 NANOGP8Q6NSW7 305 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 USP51Q70EK9 711 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 RAB44Q7Z6P3 723 aaPredicted RBP16.32■□□□□ 0.2
SDC4-201ENST00000372733 DPP9Q86TI2 863 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 ZC3H7AQ8IWR0 971 aaKnown RBP16.32■□□□□ 0.2
SDC4-201ENST00000372733 ZBTB8BQ8NAP8 495 aaPredicted RBP16.32■□□□□ 0.2
SDC4-201ENST00000372733 ACDQ96AP0 544 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 TBATAQ96M53 351 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 MTG1Q9BT17 334 aaPredicted RBP16.32■□□□□ 0.2
SDC4-201ENST00000372733 SEMA4BQ9NPR2 832 aaPredicted RBP16.32■□□□□ 0.2
SDC4-201ENST00000372733 MIOSQ9NXC5 875 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 PKD2L2Q9NZM6 624 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 GPR45Q9Y5Y3 372 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 CLASP2O75122 1294 aaKnown RBP16.32■□□□□ 0.2
SDC4-201ENST00000372733 DDNO94850 711 aaPredicted RBP16.32■□□□□ 0.2
SDC4-201ENST00000372733 MMP2P08253 660 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 FAM163BP0C2L3 166 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 IDO1P14902 403 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 HLCSP50747 726 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 FOXM1Q08050 763 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 TRAF2Q12933 501 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 NFATC3Q12968 1075 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 ATP1A4Q13733 1029 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 POLD3Q15054 466 aaPredicted RBP16.32■□□□□ 0.2
SDC4-201ENST00000372733 SIRPB2Q5JXA9 342 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 BRMS1LQ5PSV4 323 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 DCDC5Q6ZRR9 648 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 KIAA2013Q8IYS2 634 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 TMEM209Q96SK2 561 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 ZFYVE28Q9HCC9 887 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 INTS10Q9NVR2 710 aaKnown RBP16.32■□□□□ 0.2
SDC4-201ENST00000372733 HS3ST4Q9Y661 456 aa16.32■□□□□ 0.2
SDC4-201ENST00000372733 COL4A4P53420 1690 aaPredicted RBP16.31■□□□□ 0.2
SDC4-201ENST00000372733 KANSL1LA0AUZ9 987 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 MROH6A6NGR9 719 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 NOL3O60936 208 aaKnown RBP16.31■□□□□ 0.2
SDC4-201ENST00000372733 GJB3O75712 270 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 ZNF37AP17032 561 aaPredicted RBP16.31■□□□□ 0.2
SDC4-201ENST00000372733 EEF1B2P24534 225 aaKnown RBP16.31■□□□□ 0.2
SDC4-201ENST00000372733 PCSK1P29120 753 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 EEF1DP29692 281 aaKnown RBP16.31■□□□□ 0.2
SDC4-201ENST00000372733 SLC26A3P40879 764 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 MAGEA8P43361 318 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 BMXP51813 675 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 ADARB1P78563 741 aaKnown RBP16.31■□□□□ 0.2
SDC4-201ENST00000372733 SEMA3AQ14563 771 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 MFSD10Q14728 455 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 TIGD5Q53EQ6 642 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 TMEM214Q6NUQ4 689 aaKnown RBP16.31■□□□□ 0.2
SDC4-201ENST00000372733 FAM117BQ6P1L5 589 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms