RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 PTCD2Q8WV60 388 aaKnown RBP12.09□□□□□ -0.47
CLIP3-201ENST00000360535 TFAP2CQ92754 450 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 PTPN18Q99952 460 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 GMIPQ9P107 970 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 SLC8A2Q9UPR5 921 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 SLC27A5Q9Y2P5 690 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 FADS3Q9Y5Q0 445 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 MAGED1Q9Y5V3 778 aaPredicted RBP12.09□□□□□ -0.47
CLIP3-201ENST00000360535 NYNRINQ9P2P1 1898 aaKnown RBP12.09□□□□□ -0.47
CLIP3-201ENST00000360535 NPEPPSL1A6NEC2 478 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 BTN3A1O00481 513 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 MGEA5O60502 916 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 ZNF189O75820 626 aaPredicted RBP12.09□□□□□ -0.47
CLIP3-201ENST00000360535 CHRNA1P02708 482 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 POLD2P49005 469 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 PSMD7P51665 324 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 CLCQ05315 142 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 LIPEQ05469 1076 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 AAK1Q2M2I8 961 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 UGT3A2Q3SY77 523 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 CDYL2Q8N8U2 506 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 ATAD1Q8NBU5 361 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 IRGQQ8WZA9 623 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 PPM1MQ96MI6 270 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 ADAM2Q99965 735 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 GID8Q9NWU2 228 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 LAMA2P24043 3122 aaKnown RBP12.09□□□□□ -0.47
CLIP3-201ENST00000360535 A0A1W2PPW3 197 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 KATNA1O75449 491 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 GSK3BP49841 420 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 PMS2P3Q13401 168 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 C10orf120Q5SQS8 335 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 GDF6Q6KF10 455 aaPredicted RBP12.09□□□□□ -0.47
CLIP3-201ENST00000360535 UGT3A1Q6NUS8 523 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 ERI1Q8IV48 349 aaKnown RBP12.09□□□□□ -0.47
CLIP3-201ENST00000360535 PAF1Q8N7H5 531 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 ISOC1Q96CN7 298 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 ERLEC1Q96DZ1 483 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 ADNPQ9H2P0 1102 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 ALG2Q9H553 416 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 CXorf21Q9HAI6 301 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 CCM2LQ9NUG4 571 aaPredicted RBP12.09□□□□□ -0.47
CLIP3-201ENST00000360535 INTS7Q9NVH2 962 aaKnown RBP12.09□□□□□ -0.47
CLIP3-201ENST00000360535 GALPQ9UBC7 116 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 IKZF3Q9UKT9 509 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 PADI3Q9ULW8 664 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 A0A087WXM4 84 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 SLC12A8A0AV02 714 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 MUSKO15146 869 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 GPR39O43194 453 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 LDB2O43679 373 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 PENKP01210 267 aaPredicted RBP12.08□□□□□ -0.48
CLIP3-201ENST00000360535 MMP2P08253 660 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 CYP2C18P33260 490 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 GGT5P36269 586 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 ZNF135P52742 658 aaPredicted RBP12.08□□□□□ -0.48
CLIP3-201ENST00000360535 CTBSQ01459 385 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 MRNIPQ6NTE8 343 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 FBXL22Q6P050 247 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 ANKRD60Q9BZ19 345 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 TRIM15Q9C019 465 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 ZYG11BQ9C0D3 744 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 SMOC2Q9H3U7 446 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 TMEM165Q9HC07 324 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 CATSPERZQ9NTU4 200 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 CHCHD3Q9NX63 227 aaKnown RBP12.08□□□□□ -0.48
CLIP3-201ENST00000360535 CNOT11Q9UKZ1 510 aaKnown RBP12.08□□□□□ -0.48
CLIP3-201ENST00000360535 TRPV2Q9Y5S1 764 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 RAMP2O60895 175 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 NFKBIAP25963 317 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 MS4A13Q5J8X5 152 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 LDLRAD1Q5T700 205 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 FAM171BQ6P995 826 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 DNAJC14Q6Y2X3 702 aaPredicted RBP12.08□□□□□ -0.48
CLIP3-201ENST00000360535 LRRC43Q8N309 656 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 DHRSXQ8N5I4 330 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 FNDC5Q8NAU1 212 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 RSPH1Q8WYR4 309 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 GPR21Q99679 349 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 LTB4R2Q9NPC1 389 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 TIMMDC1Q9NPL8 285 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 POLR3BQ9NW08 1133 aaPredicted RBP12.08□□□□□ -0.48
CLIP3-201ENST00000360535 DOLKQ9UPQ8 538 aa12.08□□□□□ -0.48
CLIP3-201ENST00000360535 CCDC154A6NI56 674 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 FXYD1O00168 92 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 SLC7A4O43246 635 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 NDUFS3O75489 264 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 ATE1O95260 518 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 ZNF865P0CJ78 1059 aaPredicted RBP12.07□□□□□ -0.48
CLIP3-201ENST00000360535 ZNF37AP17032 561 aaPredicted RBP12.07□□□□□ -0.48
CLIP3-201ENST00000360535 OR1G1P47890 313 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 PIK3CGP48736 1102 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 TPD52P55327 224 aaPredicted RBP12.07□□□□□ -0.48
CLIP3-201ENST00000360535 OR4K2Q8NGD2 314 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 OR4L1Q8NH43 312 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 MYEOVQ96EZ4 313 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 SERPINB11Q96P15 392 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 MFSD1Q9H3U5 465 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 MRM3Q9HC36 420 aaKnown RBP12.07□□□□□ -0.48
CLIP3-201ENST00000360535 IQCF5A8MTL0 148 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms