RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 PRDM12Q9H4Q4 367 aa6.45□□□□□ -1.38
UPF2-201ENST00000356352 STOML2Q9UJZ1 356 aa6.45□□□□□ -1.38
UPF2-201ENST00000356352 MKL2Q9ULH7 1088 aa6.45□□□□□ -1.38
UPF2-201ENST00000356352 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP6.45□□□□□ -1.38
UPF2-201ENST00000356352 ROBO3Q96MS0 1386 aa6.45□□□□□ -1.38
UPF2-201ENST00000356352 ASTN1O14525 1302 aa6.45□□□□□ -1.38
UPF2-201ENST00000356352 H3BM21 787 aa6.45□□□□□ -1.38
UPF2-201ENST00000356352 PSMD11O00231 422 aa6.45□□□□□ -1.38
UPF2-201ENST00000356352 CBFA2T3O75081 653 aa6.45□□□□□ -1.38
UPF2-201ENST00000356352 RSL1D1O76021 490 aaKnown RBP6.45□□□□□ -1.38
UPF2-201ENST00000356352 UBXN7O94888 489 aa6.45□□□□□ -1.38
UPF2-201ENST00000356352 CXCL14O95715 111 aa6.45□□□□□ -1.38
UPF2-201ENST00000356352 VIPP01282 170 aa6.45□□□□□ -1.38
UPF2-201ENST00000356352 APOC1P02654 83 aa6.45□□□□□ -1.38
UPF2-201ENST00000356352 CYP3A5P20815 502 aa6.45□□□□□ -1.38
UPF2-201ENST00000356352 NOMO3P69849 1222 aa6.45□□□□□ -1.38
UPF2-201ENST00000356352 SRSF11Q05519 484 aaKnown RBP6.45□□□□□ -1.38
UPF2-201ENST00000356352 ENPEPQ07075 957 aa6.45□□□□□ -1.38
UPF2-201ENST00000356352 PPP3CAQ08209 521 aa6.45□□□□□ -1.38
UPF2-201ENST00000356352 CAPSQ13938 189 aa6.45□□□□□ -1.38
UPF2-201ENST00000356352 AKIRIN2Q53H80 203 aa6.45□□□□□ -1.38
UPF2-201ENST00000356352 ZNF697Q5TEC3 545 aa6.45□□□□□ -1.38
UPF2-201ENST00000356352 APOBEC3HQ6NTF7 200 aaKnown RBP6.45□□□□□ -1.38
UPF2-201ENST00000356352 FAM151BQ6UXP7 276 aa6.45□□□□□ -1.38
UPF2-201ENST00000356352 PPTC7Q8NI37 304 aa6.45□□□□□ -1.38
UPF2-201ENST00000356352 CYP2W1Q8TAV3 490 aa6.45□□□□□ -1.38
UPF2-201ENST00000356352 FATE1Q969F0 183 aa6.45□□□□□ -1.38
UPF2-201ENST00000356352 MARK4Q96L34 752 aa6.45□□□□□ -1.38
UPF2-201ENST00000356352 MNTQ99583 582 aa6.45□□□□□ -1.38
UPF2-201ENST00000356352 DHX33Q9H6R0 707 aaKnown RBP6.45□□□□□ -1.38
UPF2-201ENST00000356352 DNAJC28Q9NX36 388 aa6.45□□□□□ -1.38
UPF2-201ENST00000356352 ELOVL2Q9NXB9 296 aa6.45□□□□□ -1.38
UPF2-201ENST00000356352 GNEQ9Y223 722 aaKnown RBP6.45□□□□□ -1.38
UPF2-201ENST00000356352 EFR3BQ9Y2G0 817 aa6.45□□□□□ -1.38
UPF2-201ENST00000356352 AGLP35573 1532 aa6.45□□□□□ -1.38
UPF2-201ENST00000356352 KIAA1210Q9ULL0 1709 aa6.45□□□□□ -1.38
UPF2-201ENST00000356352 TBC1D3DA0A087WVF3 549 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 TBC1D3IA0A087WXS9 549 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 TBC1D3EA0A087X179 549 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 TBC1D3KA0A087X1G2 549 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 TBC1D3FA6NER0 549 aaPredicted RBP6.44□□□□□ -1.38
UPF2-201ENST00000356352 C5orf60A6NFR6 353 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 FAM25EA8MYX2 175 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 TBC1D3LB9A6J9 549 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 CYB5AP00167 134 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 FABP3P05413 133 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 TBC1D3HP0C7X1 549 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 UROSP10746 265 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 GNPDA1P46926 289 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 DNASE1L1P49184 302 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 BST1Q10588 318 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 MED22Q15528 200 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 TBC1D3GQ6DHY5 549 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 TBC1D3CQ6IPX1 549 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 CUZD1Q86UP6 607 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 RANBP3LQ86VV4 465 aaPredicted RBP6.44□□□□□ -1.38
UPF2-201ENST00000356352 UNC5BQ8IZJ1 945 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 TBC1D3Q8IZP1 549 aaPredicted RBP6.44□□□□□ -1.38
UPF2-201ENST00000356352 PSMA8Q8TAA3 256 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 TSEN15Q8WW01 171 aaKnown RBP6.44□□□□□ -1.38
UPF2-201ENST00000356352 RFKQ969G6 155 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 TRNT1Q96Q11 434 aaKnown RBP6.44□□□□□ -1.38
UPF2-201ENST00000356352 GLOD4Q9HC38 313 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 ABCB10Q9NRK6 738 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 MRPS17Q9Y2R5 130 aaKnown RBP6.44□□□□□ -1.38
UPF2-201ENST00000356352 PPRC1Q5VV67 1664 aaKnown RBP6.44□□□□□ -1.38
UPF2-201ENST00000356352 ATXN2Q99700 1313 aaKnown RBP6.44□□□□□ -1.38
UPF2-201ENST00000356352 ALPPL2P10696 532 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 CTPS1P17812 591 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 ALDH4A1P30038 563 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 CDH4P55283 916 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 TUSC3Q13454 348 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 KCNA10Q16322 511 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 ZIK1Q3SY52 487 aaPredicted RBP6.44□□□□□ -1.38
UPF2-201ENST00000356352 FAM131AQ6UXB0 335 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 CXCL17Q6UXB2 119 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 RASSF6Q6ZTQ3 369 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 ANKRD23Q86SG2 305 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 PARGQ86W56 976 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 GALNT13Q8IUC8 556 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 C12orf56Q8IXR9 622 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 RASGEF1AQ8N9B8 481 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 CAPSLQ8WWF8 208 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 SHC3Q92529 594 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 AZIN2Q96A70 460 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 MCMBPQ9BTE3 642 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 RAB11FIP5Q9BXF6 653 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 LRTM1Q9HBL6 345 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 IMP3Q9NV31 184 aaKnown RBP6.44□□□□□ -1.38
UPF2-201ENST00000356352 SEC14L3Q9UDX4 400 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 NPEPPSL1A6NEC2 478 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 NEDD8-MDP1E9PL57 170 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 WRBO00258 174 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 ALOX15BO15296 676 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 TLX3O43711 291 aaPredicted RBP6.44□□□□□ -1.38
UPF2-201ENST00000356352 REM1O75628 298 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 TIPRLO75663 272 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 TCEA3O75764 348 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 LCA5LO95447 670 aa6.44□□□□□ -1.38
UPF2-201ENST00000356352 GJB6O95452 261 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms