RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 SGTAO43765 313 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 KLK8O60259 260 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 ERLIN1O75477 346 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 CNTN5O94779 1100 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 TJP3O95049 919 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 PCDH8O95206 1070 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 PRAMEF12O95522 483 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 ACSL3O95573 720 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 AP2A1O95782 977 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 KRT1P04264 644 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 KRT16P08779 473 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 PRR35P0CG20 571 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 MTHFD2P13995 350 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 AGXTP21549 392 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 GLDCP23378 1020 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 ADRA1DP25100 572 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 PSMA2P25787 234 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 CRHR1P34998 444 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 GNL1P36915 607 aaPredicted RBP2.34□□□□□ -2.04
VPS54-202ENST00000354504 RGRP47804 291 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 PSMD8P48556 350 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 TAF6P49848 677 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 LGALS4P56470 323 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 KCNJ2P63252 427 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 HTRA4P83105 476 aaPredicted RBP2.34□□□□□ -2.04
VPS54-202ENST00000354504 CDC42EP1Q00587 391 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 GRIK3Q13003 919 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 GPS1Q13098 491 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 MS4A13Q5J8X5 152 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 FAM102AQ5T9C2 384 aaPredicted RBP2.34□□□□□ -2.04
VPS54-202ENST00000354504 NXNQ6DKJ4 435 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 TAF2Q6P1X5 1199 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 LILRA6Q6PI73 481 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 TTC7BQ86TV6 843 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 SUGP1Q8IWZ8 645 aaKnown RBP2.34□□□□□ -2.04
VPS54-202ENST00000354504 TMEM86AQ8N2M4 240 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 TXLNBQ8N3L3 684 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 CCDC33Q8N5R6 958 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 FAM76AQ8TAV0 307 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 DQX1Q8TE96 717 aaKnown RBP2.34□□□□□ -2.04
VPS54-202ENST00000354504 RNF139Q8WU17 664 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 AZIN2Q96A70 460 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 TRIM43Q96BQ3 446 aaPredicted RBP2.34□□□□□ -2.04
VPS54-202ENST00000354504 HAUS1Q96CS2 278 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 FNBP1Q96RU3 617 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 RANBP9Q96S59 729 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 NAP1L3Q99457 506 aaPredicted RBP2.34□□□□□ -2.04
VPS54-202ENST00000354504 AGAP2Q99490 1192 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 ARPC5LQ9BPX5 153 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 MECRQ9BV79 373 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 GCOM2Q9BZD3 368 aaPredicted RBP2.34□□□□□ -2.04
VPS54-202ENST00000354504 ULBP1Q9BZM6 244 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 TRIM31Q9BZY9 425 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 RNF38Q9H0F5 515 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 ZWILCHQ9H900 591 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 CNGB3Q9NQW8 809 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 MTPAPQ9NVV4 582 aaKnown RBP eCLIP2.34□□□□□ -2.04
VPS54-202ENST00000354504 TMEM248Q9NWD8 314 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 SYBUQ9NX95 663 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 SAGE1Q9NXZ1 904 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 ASH2LQ9UBL3 628 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 AGO1Q9UL18 857 aaKnown RBP2.34□□□□□ -2.04
VPS54-202ENST00000354504 POLHQ9Y253 713 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 SLC5A6Q9Y289 635 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 MTMR11A4FU01 709 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 HACD1B0YJ81 288 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 DLGAP1O14490 977 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 TPP1O14773 563 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 GRID2O43424 1007 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 HSF2BPO75031 334 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 PEX11AO75192 247 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 NDUFS2O75306 463 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 HLA-DQB2P05538 268 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 KRT7P08729 469 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 PDGFRAP16234 1089 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 SP100P23497 879 aaPredicted RBP2.33□□□□□ -2.04
VPS54-202ENST00000354504 SKIV2L2P42285 1042 aaKnown RBP2.33□□□□□ -2.04
VPS54-202ENST00000354504 PAFAH1B1P43034 410 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 CCR10P46092 362 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 FNTBP49356 437 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 SLC5A3P53794 718 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 GEMIN4P57678 1058 aaKnown RBP2.33□□□□□ -2.04
VPS54-202ENST00000354504 CCNA1P78396 465 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 DNAJC3Q13217 504 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 RIPK1Q13546 671 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 CRYMQ14894 314 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 PTPRRQ15256 657 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 CD276Q5ZPR3 534 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 BICRALQ6AI39 1079 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 AFTPHQ6ULP2 937 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 RASSF3Q86WH2 238 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 KBTBD2Q8IY47 623 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 ABI1Q8IZP0 508 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 FAM156AQ8NDB6 213 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 ASB11Q8WXH4 323 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 ZNF75CPQ92670 426 aaPredicted RBP2.33□□□□□ -2.04
VPS54-202ENST00000354504 TTC17Q96AE7 1141 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 ISG20Q96AZ6 181 aaKnown RBP2.33□□□□□ -2.04
VPS54-202ENST00000354504 CHMP6Q96FZ7 201 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 BICD1Q96G01 975 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms