RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 MAPRE3Q9UPY8 281 aa14.85□□□□□ -0.03
COL17A1-201ENST00000353479 GRIN2DO15399 1336 aa14.85□□□□□ -0.03
COL17A1-201ENST00000353479 BTAF1O14981 1849 aa14.85□□□□□ -0.03
COL17A1-201ENST00000353479 MYH1P12882 1939 aa14.85□□□□□ -0.03
COL17A1-201ENST00000353479 CYBAP13498 195 aa14.85□□□□□ -0.03
COL17A1-201ENST00000353479 S100A5P33763 92 aa14.85□□□□□ -0.03
COL17A1-201ENST00000353479 IL5RAQ01344 420 aa14.85□□□□□ -0.03
COL17A1-201ENST00000353479 OGDHQ02218 1023 aa14.85□□□□□ -0.03
COL17A1-201ENST00000353479 GNA13Q14344 377 aa14.85□□□□□ -0.03
COL17A1-201ENST00000353479 TAF1AQ15573 450 aaPredicted RBP14.85□□□□□ -0.03
COL17A1-201ENST00000353479 FBXO48Q5FWF7 155 aa14.85□□□□□ -0.03
COL17A1-201ENST00000353479 TMPRSS11BQ86T26 416 aa14.85□□□□□ -0.03
COL17A1-201ENST00000353479 ALYREFQ86V81 257 aaKnown RBP14.85□□□□□ -0.03
COL17A1-201ENST00000353479 KLK6Q92876 244 aa14.85□□□□□ -0.03
COL17A1-201ENST00000353479 C12orf65Q9H3J6 166 aaKnown RBP14.85□□□□□ -0.03
COL17A1-201ENST00000353479 INPPL1O15357 1258 aa14.85□□□□□ -0.03
COL17A1-201ENST00000353479 IPO13O94829 963 aaKnown RBP14.85□□□□□ -0.03
COL17A1-201ENST00000353479 HLA-DQB2P05538 268 aa14.85□□□□□ -0.03
COL17A1-201ENST00000353479 MPSTP25325 297 aa14.85□□□□□ -0.03
COL17A1-201ENST00000353479 UBE3AQ05086 875 aa14.85□□□□□ -0.03
COL17A1-201ENST00000353479 RFTN1Q14699 578 aaPredicted RBP14.85□□□□□ -0.03
COL17A1-201ENST00000353479 GCNT7Q6ZNI0 430 aa14.85□□□□□ -0.03
COL17A1-201ENST00000353479 STK32CQ86UX6 486 aa14.85□□□□□ -0.03
COL17A1-201ENST00000353479 DENND6AQ8IWF6 608 aa14.85□□□□□ -0.03
COL17A1-201ENST00000353479 RERGLQ9H628 205 aa14.85□□□□□ -0.03
COL17A1-201ENST00000353479 MTF2Q9Y483 593 aaPredicted RBP14.85□□□□□ -0.03
COL17A1-201ENST00000353479 POLR3HQ9Y535 204 aaPredicted RBP14.85□□□□□ -0.03
COL17A1-201ENST00000353479 COL6A2P12110 1019 aa14.85□□□□□ -0.03
COL17A1-201ENST00000353479 TEAD2Q15562 447 aa14.85□□□□□ -0.03
COL17A1-201ENST00000353479 ADGRD1Q6QNK2 874 aa14.85□□□□□ -0.03
COL17A1-201ENST00000353479 BHLHE22Q8NFJ8 381 aaPredicted RBP14.85□□□□□ -0.03
COL17A1-201ENST00000353479 WFIKKN2Q8TEU8 576 aa14.85□□□□□ -0.03
COL17A1-201ENST00000353479 PHACTR1Q9C0D0 580 aa14.85□□□□□ -0.03
COL17A1-201ENST00000353479 ATG10Q9H0Y0 220 aa14.85□□□□□ -0.03
COL17A1-201ENST00000353479 MMADHCQ9H3L0 296 aaPredicted RBP14.85□□□□□ -0.03
COL17A1-201ENST00000353479 EIF2B3Q9NR50 452 aaKnown RBP14.85□□□□□ -0.03
COL17A1-201ENST00000353479 DEAF1O75398 565 aaPredicted RBP14.84□□□□□ -0.03
COL17A1-201ENST00000353479 VIPP01282 170 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 CHRNA1P02708 482 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 IQCF3P0C7M6 154 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 ADH5P11766 374 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 NRLP54845 237 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 SLC10A7Q0GE19 358 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 MORN1Q5T089 497 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 MBLAC2Q68D91 279 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 ZC3H7AQ8IWR0 971 aaKnown RBP14.84□□□□□ -0.03
COL17A1-201ENST00000353479 HDDC3Q8N4P3 179 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 TMCO5AQ8N6Q1 288 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 GDPD5Q8WTR4 605 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 ACDQ96AP0 544 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 AGAP2Q99490 1192 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 PRRG3Q9BZD7 231 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 COPG2Q9UBF2 871 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 HS6ST1O60243 411 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 ASLP04424 464 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 NOS3P29474 1203 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 SOX4Q06945 474 aaPredicted RBP14.84□□□□□ -0.03
COL17A1-201ENST00000353479 RNF43Q68DV7 783 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 FSTL4Q6MZW2 842 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 KRT73Q86Y46 540 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 CYB5D2Q8WUJ1 264 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 TMEM209Q96SK2 561 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 TMEM79Q9BSE2 394 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 SEMA6AQ9H2E6 1030 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 ZCCHC18P0CG32 403 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 TIE1P35590 1138 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 ACVRL1P37023 503 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 ZNHIT3Q15649 155 aaPredicted RBP14.84□□□□□ -0.03
COL17A1-201ENST00000353479 ST13P5Q8NFI4 369 aaPredicted RBP14.84□□□□□ -0.03
COL17A1-201ENST00000353479 NACC2Q96BF6 587 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 DNAJC11Q9NVH1 559 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 PSMD13Q9UNM6 376 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 ZNF711Q9Y462 761 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 DRD4P21917 467 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 POLD2P49005 469 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 MRPS22P82650 360 aaKnown RBP14.84□□□□□ -0.03
COL17A1-201ENST00000353479 DCAF12L1Q5VU92 463 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 CELF5Q8N6W0 485 aaKnown RBP14.84□□□□□ -0.03
COL17A1-201ENST00000353479 NELL1Q92832 810 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 FCRL5Q96RD9 977 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 ROGDIQ9GZN7 287 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 ABCG4Q9H172 646 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 TDP1Q9NUW8 608 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 WNT6Q9Y6F9 365 aa14.84□□□□□ -0.03
COL17A1-201ENST00000353479 CHD4Q14839 1912 aa14.83□□□□□ -0.03
COL17A1-201ENST00000353479 ILVBLA1L0T0 632 aa14.83□□□□□ -0.03
COL17A1-201ENST00000353479 RGSL1A5PLK6 1076 aa14.83□□□□□ -0.03
COL17A1-201ENST00000353479 DDX6P26196 483 aaKnown RBP eCLIP14.83□□□□□ -0.03
COL17A1-201ENST00000353479 HK2P52789 917 aa14.83□□□□□ -0.03
COL17A1-201ENST00000353479 PRKG2Q13237 762 aa14.83□□□□□ -0.03
COL17A1-201ENST00000353479 NAE1Q13564 534 aa14.83□□□□□ -0.03
COL17A1-201ENST00000353479 KLHL35Q6PF15 583 aa14.83□□□□□ -0.03
COL17A1-201ENST00000353479 GPR180Q86V85 440 aa14.83□□□□□ -0.03
COL17A1-201ENST00000353479 CAMK1DQ8IU85 385 aa14.83□□□□□ -0.03
COL17A1-201ENST00000353479 SIDT2Q8NBJ9 832 aaKnown RBP14.83□□□□□ -0.03
COL17A1-201ENST00000353479 SMG9Q9H0W8 520 aaKnown RBP14.83□□□□□ -0.03
COL17A1-201ENST00000353479 POLMQ9NP87 494 aaPredicted RBP14.83□□□□□ -0.03
COL17A1-201ENST00000353479 SNAP91O60641 907 aa14.83□□□□□ -0.04
COL17A1-201ENST00000353479 CNPP09543 421 aaKnown RBP14.83□□□□□ -0.04
COL17A1-201ENST00000353479 RPL3P39023 403 aaKnown RBP14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms