RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 ZFP36L2P47974 494 aaKnown RBP6.77□□□□□ -1.33
VPS39-202ENST00000348544 IST1P53990 364 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 CDH13P55290 713 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 FOXA1P55317 472 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 OR4D2P58180 307 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 VBP1P61758 197 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 CDH17Q12864 832 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 POU6F1Q14863 301 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 TMEM132DQ14C87 1099 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 SLC25A52Q3SY17 297 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 PAGE3Q5JUK9 113 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 PKN3Q6P5Z2 889 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 BLOC1S3Q6QNY0 202 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 RNF19BQ6ZMZ0 732 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 LINC00299Q6ZSB3 139 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 SAPCD2Q86UD0 394 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 C8orf59Q8N0T1 100 aaPredicted RBP6.77□□□□□ -1.33
VPS39-202ENST00000348544 ELMOD1Q8N336 334 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 MIER2Q8N344 545 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 OR7A2PQ8NGA2 310 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 OR13J1Q8NGT2 312 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 DYNC2LI1Q8TCX1 351 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 ANKRD49Q8WVL7 239 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 FAR1Q8WVX9 515 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 SDCCAG3Q96C92 435 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 TEX37Q96LM6 180 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 C2orf40Q9H1Z8 148 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 SMOC2Q9H3U7 446 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 SMURF2Q9HAU4 748 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 EXD2Q9NVH0 621 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 FAM118AQ9NWS6 357 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 DPP3Q9NY33 737 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 CAMSAP3Q9P1Y5 1249 aaPredicted RBP6.77□□□□□ -1.33
VPS39-202ENST00000348544 EVLQ9UI08 416 aaPredicted RBP6.77□□□□□ -1.33
VPS39-202ENST00000348544 SHROOM3Q8TF72 1996 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 FNDC1Q4ZHG4 1894 aaPredicted RBP6.77□□□□□ -1.33
VPS39-202ENST00000348544 DYTNA2CJ06 578 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 PIP5K1BO14986 540 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 UMPSP11172 480 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 CPB1P15086 417 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 CXCR2P25025 360 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 ACVR2AP27037 513 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 SERPINB1P30740 379 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 TGFBR1P36897 503 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 RPL34P49207 117 aaKnown RBP6.77□□□□□ -1.33
VPS39-202ENST00000348544 BCAT1P54687 386 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 ARPC4P59998 168 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 GABARAPL2P60520 117 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 SH3BP2P78314 561 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 GALNT1Q10472 559 aaPredicted RBP6.77□□□□□ -1.33
VPS39-202ENST00000348544 ILF2Q12905 390 aaKnown RBP6.77□□□□□ -1.33
VPS39-202ENST00000348544 TMEM132BQ14DG7 1078 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 CRY1Q16526 586 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 AMHR2Q16671 573 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 UGP2Q16851 508 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 FUT11Q495W5 492 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 UNC50Q53HI1 259 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 ZNF470Q6ECI4 717 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 UTS2BQ765I0 119 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 KRT27Q7Z3Y8 459 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 STK32CQ86UX6 486 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 DCP1BQ8IZD4 617 aaKnown RBP6.77□□□□□ -1.33
VPS39-202ENST00000348544 HS3ST5Q8IZT8 346 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 SPATA22Q8NHS9 363 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 SH3RF2Q8TEC5 729 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 DPF3Q92784 378 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 ZNF419Q96HQ0 510 aaPredicted RBP6.77□□□□□ -1.33
VPS39-202ENST00000348544 C12orf42Q96LP6 360 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 KCNA7Q96RP8 456 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 GMLQ99445 158 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 BDH2Q9BUT1 245 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 TRIM54Q9BYV2 358 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 TUBB1Q9H4B7 451 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 CARS2Q9HA77 564 aaKnown RBP6.77□□□□□ -1.33
VPS39-202ENST00000348544 PARVBQ9HBI1 364 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 SDR39U1Q9NRG7 319 aaPredicted RBP6.77□□□□□ -1.33
VPS39-202ENST00000348544 TMA7Q9Y2S6 64 aaKnown RBP6.77□□□□□ -1.33
VPS39-202ENST00000348544 EP400Q96L91 3159 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 NUP205Q92621 2012 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 ILVBLA1L0T0 632 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 LRRC14BA6NHZ5 514 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 ZNF99A8MXY4 864 aaPredicted RBP6.76□□□□□ -1.33
VPS39-202ENST00000348544 PTGES3LE9PB15 166 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 TNFRSF10AO00220 468 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 MGEA5O60502 916 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 DEAF1O75398 565 aaPredicted RBP6.76□□□□□ -1.33
VPS39-202ENST00000348544 SUPT7LO94864 414 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 MATN4O95460 622 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 CHRNA1P02708 482 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 PCNAP12004 261 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 IMPDH1P20839 514 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 CA8P35219 290 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 CASP3P42574 277 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 POLD2P49005 469 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 ALDH7A1P49419 539 aaKnown RBP6.76□□□□□ -1.33
VPS39-202ENST00000348544 CLCN3P51790 818 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 TKTL1P51854 596 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 DIO3P55073 304 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 NCS1P62166 190 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 RBP5P82980 135 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms