RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 FAIM2Q9BWQ8 316 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 PCDH9Q9HC56 1237 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 KLHL1Q9NR64 748 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 TMEM184CQ9NVA4 438 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 DDX18Q9NVP1 670 aaKnown RBP3.28□□□□□ -1.88
CSMD3-202ENST00000339701 DDX43Q9NXZ2 648 aaKnown RBP3.28□□□□□ -1.88
CSMD3-202ENST00000339701 MAGEL2Q9UJ55 1249 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 RAB26Q9ULW5 256 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 COLEC10Q9Y6Z7 277 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 FAM234BA2RU67 622 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 TRAPPC13A5PLN9 417 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 CYP7B1O75881 506 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 KAT7O95251 611 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 ITGA2BP08514 1039 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 ATP6V1C1P21283 382 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 ALDH18A1P54886 795 aaKnown RBP3.28□□□□□ -1.88
CSMD3-202ENST00000339701 C19orf57Q0VDD7 668 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 SWI5Q1ZZU3 235 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 CDC42EP5Q6NZY7 148 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 RBM43Q6ZSC3 357 aaKnown RBP3.28□□□□□ -1.88
CSMD3-202ENST00000339701 DYMQ7RTS9 669 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 PROSER1Q86XN7 944 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 NKAPQ8N5F7 415 aaKnown RBP3.28□□□□□ -1.88
CSMD3-202ENST00000339701 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP3.28□□□□□ -1.88
CSMD3-202ENST00000339701 FAM160A2Q8N612 972 aaPredicted RBP3.28□□□□□ -1.88
CSMD3-202ENST00000339701 SLC4A11Q8NBS3 891 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 OR10Q1Q8NGQ4 319 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 TBC1D15Q8TC07 691 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 KCTD4Q8WVF5 259 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 SEC14L1Q92503 715 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 MIEF2Q96C03 454 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 MRRFQ96E11 262 aaKnown RBP3.28□□□□□ -1.88
CSMD3-202ENST00000339701 SIK2Q9H0K1 926 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 PUS7LQ9H0K6 701 aaKnown RBP3.28□□□□□ -1.88
CSMD3-202ENST00000339701 TRIT1Q9H3H1 467 aaKnown RBP3.28□□□□□ -1.88
CSMD3-202ENST00000339701 NMRAL1Q9HBL8 299 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 PAK6Q9NQU5 681 aaPredicted RBP3.28□□□□□ -1.88
CSMD3-202ENST00000339701 TMPRSS11EQ9UL52 423 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 UBQLN1Q9UMX0 589 aaKnown RBP3.28□□□□□ -1.88
CSMD3-202ENST00000339701 A0A1B0GTH6 734 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 EEF2KO00418 725 aaKnown RBP3.28□□□□□ -1.88
CSMD3-202ENST00000339701 SLC22A1O15245 554 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 CYP26A1O43174 497 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 PRKAB2O43741 272 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 CCNDBP1O95273 360 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 PRKCBP05771 671 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 GLI1P08151 1106 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 SLC10A3P09131 477 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 ENO3P13929 434 aaPredicted RBP3.28□□□□□ -1.88
CSMD3-202ENST00000339701 KCNA2P16389 499 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 BMP7P18075 431 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 HDCP19113 662 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 CASP1P29466 404 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 SLC6A4P31645 630 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 GUCY1A2P33402 732 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 TAS2R43P59537 309 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 E2F1Q01094 437 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 FOXM1Q08050 763 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 TAF5Q15542 800 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 PKDCCQ504Y2 493 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 CDKL4Q5MAI5 379 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 DCLRE1AQ6PJP8 1040 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 TMPRSS11AQ6ZMR5 421 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 OTOAQ7RTW8 1153 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 PID1Q7Z2X4 250 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 RNF135Q8IUD6 432 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 AHI1Q8N157 1196 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 EEF1AKMT1Q8WVE0 214 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 UCK2Q9BZX2 261 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 SPRTNQ9H040 489 aaPredicted RBP3.28□□□□□ -1.88
CSMD3-202ENST00000339701 KIAA1683Q9H0B3 1180 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 POLR3FQ9H1D9 316 aaPredicted RBP3.28□□□□□ -1.88
CSMD3-202ENST00000339701 TMEM8AQ9HCN3 771 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 ACSS2Q9NR19 701 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 METTL5Q9NRN9 209 aaKnown RBP3.28□□□□□ -1.88
CSMD3-202ENST00000339701 ERVW-1Q9UQF0 538 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 PCDHA11Q9Y5I1 949 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 CNTNAP2Q9UHC6 1331 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 SNED1Q8TER0 1413 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 CYP2D7A0A087X1C5 515 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 NPHP3-ACAD11A0A0J9YXS1 232 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 SDR42E2A6NKP2 422 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 BTNL10A8MVZ5 291 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 SNCGO76070 127 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 HLA-EP13747 358 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 CTBP2P56545 445 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 CACNB2Q08289 660 aaPredicted RBP3.28□□□□□ -1.88
CSMD3-202ENST00000339701 GAS6Q14393 721 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 ZNHIT3Q15649 155 aaPredicted RBP3.28□□□□□ -1.88
CSMD3-202ENST00000339701 HACD4Q5VWC8 232 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 RTL6Q6ICC9 239 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 METTL2BQ6P1Q9 378 aaKnown RBP3.28□□□□□ -1.88
CSMD3-202ENST00000339701 UNC5DQ6UXZ4 953 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 KIF18BQ86Y91 864 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 BTN2A2Q8WVV5 523 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 PPP1R14AQ96A00 147 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 ARMC5Q96C12 935 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 ROPN1LQ96C74 230 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 BRINP2Q9C0B6 783 aa3.28□□□□□ -1.88
CSMD3-202ENST00000339701 PRDM12Q9H4Q4 367 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms