RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 IFNGP01579 166 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 RAP2AP10114 183 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 FSTL4Q6MZW2 842 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 ADGRG6Q86SQ4 1221 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 PCDHB18PQ96TA0 734 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 HIPK3Q9H422 1215 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 TMCC2O75069 709 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 ADORA2AP29274 412 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 SOX11P35716 441 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 CACNG1Q06432 222 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 CNPY1Q3B7I2 92 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 RALGPS1Q5JS13 557 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 MRPL39Q9NYK5 338 aaKnown RBP10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 C2CD4BA6NLJ0 364 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 CSPG5O95196 566 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 KLRC2P26717 231 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 ADRA1BP35368 520 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 TFAP2DQ7Z6R9 452 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 COLGALT2Q8IYK4 626 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 FAM198AQ9UFP1 575 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 FAM50BQ9Y247 325 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 PTPRAP18433 802 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 CRATP43155 626 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 CDH8P55286 799 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 HERVK_113P63132 956 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 ZNHIT3Q15649 155 aaPredicted RBP10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 PLET1Q6UQ28 207 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 C2orf15Q8WU43 125 aaKnown RBP10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 PIH1D2Q8WWB5 315 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 PEX13Q92968 403 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 NODALQ96S42 347 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 ERVK-6Q9BXR3 956 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 GPN1Q9HCN4 374 aaPredicted RBP10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 ZMYM5Q9UJ78 669 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 CAPN8A6NHC0 703 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 UGT2B17O75795 530 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 NTRK1P04629 796 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 PBX3P40426 434 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 ALG11Q2TAA5 492 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 KHDC1Q4VXA5 237 aaKnown RBP10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 BEND7Q8N7W2 519 aaPredicted RBP10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 FBXO30Q8TB52 745 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 PDE10AQ9Y233 779 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 TCAF1Q9Y4C2 921 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 BTN3A3O00478 584 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 NADKO95544 446 aaPredicted RBP10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 CXorf21Q9HAI6 301 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 IL1RAPQ9NPH3 570 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 PRKD1Q15139 912 aaPredicted RBP10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 NPNTQ6UXI9 565 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 FLCNQ8NFG4 579 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 ZNF671Q8TAW3 534 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 VPS35Q96QK1 796 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 OXSMQ9NWU1 459 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 COMMD9Q9P000 198 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 ADGRE2Q9UHX3 823 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 ANKDD1BA6NHY2 528 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 FABP3P05413 133 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 RHOQP17081 205 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 IDH3AP50213 366 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 SLC18A2Q05940 514 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 SKIV2LQ15477 1246 aaKnown RBP10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 XKRXQ6PP77 449 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 ASZ1Q8WWH4 475 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 MIA3Q5JRA6 1907 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 SLC15A5A6NIM6 579 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 NDST3O95803 873 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 PEPDP12955 493 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 DPEP1P16444 411 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 BOP1Q14137 746 aaKnown RBP10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 FNBP1LQ5T0N5 605 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 C6orf89Q6UWU4 347 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 AURKBQ96GD4 344 aaPredicted RBP10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 ZBTB45Q96K62 511 aaPredicted RBP10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 MECRQ9BV79 373 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 SEZ6LQ9BYH1 1024 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 PCBD2Q9H0N5 130 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 ZIM2Q9NZV7 527 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 TMED5Q9Y3A6 229 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 FAM92AA1XBS5 289 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 FAM234BA2RU67 622 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 PARNO95453 639 aaKnown RBP10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 INHBEP58166 350 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 C10orf53Q8N6V4 93 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 SLC35B2Q8TB61 432 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 CPXM1Q96SM3 734 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 TMEM45AQ9NWC5 275 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 SPG21Q9NZD8 308 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 SSNA1O43805 119 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 FEN1P39748 380 aaKnown RBP10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 PTSQ03393 145 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 NR4A3Q92570 626 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 LRTM1Q9HBL6 345 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 SIX2Q9NPC8 291 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 GON4LQ3T8J9 2241 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 A0A1W2PPM1 405 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 FADS2P1A8MWK0 482 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 FYNP06241 537 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 EEFSECP57772 596 aaKnown RBP10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms