RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 CSH1P0DML2 217 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 CSH2P0DML3 217 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 FCGR1AP12314 374 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 GABRB1P18505 474 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 BDNFP23560 247 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 GARSP41250 739 aaKnown RBP3.36□□□□□ -1.87
HMGB1-201ENST00000326004 THBS3P49746 956 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 CAMPP49913 170 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 CLCN3P51790 818 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 BNC1Q01954 994 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 LTBQ06643 244 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 FOXM1Q08050 763 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 EPS8Q12929 822 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 TRAF3Q13114 568 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 OASLQ15646 514 aaKnown RBP3.36□□□□□ -1.87
HMGB1-201ENST00000326004 CALCRLQ16602 461 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 PNLIPRP3Q17RR3 467 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 XKR9Q5GH70 373 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 DCST1Q5T197 706 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 PMS2CLQ68D20 193 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 SLC36A4Q6YBV0 504 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 SZRD1Q7Z422 152 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 TSPAN33Q86UF1 283 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 EPHX4Q8IUS5 362 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 FOXRED2Q8IWF2 684 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 SRBD1Q8N5C6 995 aaKnown RBP3.36□□□□□ -1.87
HMGB1-201ENST00000326004 TRPC4APQ8TEL6 797 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 RSRC1Q96IZ7 334 aaKnown RBP3.36□□□□□ -1.87
HMGB1-201ENST00000326004 ZNF479Q96JC4 524 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 OR2A14Q96R47 310 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 SIL1Q9H173 461 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 PCDH9Q9HC56 1237 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 ACSS1Q9NUB1 689 aaPredicted RBP3.36□□□□□ -1.87
HMGB1-201ENST00000326004 MCM9Q9NXL9 1143 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 OGFRQ9NZT2 677 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 SELENONQ9NZV5 590 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 ADD3Q9UEY8 706 aaKnown RBP3.36□□□□□ -1.87
HMGB1-201ENST00000326004 FBXL17Q9UF56 701 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 OR14J1Q9UGF5 321 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 TINAGQ9UJW2 476 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 NFS1Q9Y697 457 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 SCRIBQ14160 1630 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 IGLV5-37A0A075B6J1 123 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 C1orf226A1L170 272 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 BTBD18B2RXH4 712 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 M0QZ24 198 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 MAP2K7O14733 419 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 ATP2A1O14983 1001 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 SPINT2O43291 252 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 SMAD6O43541 496 aaKnown RBP3.35□□□□□ -1.87
HMGB1-201ENST00000326004 GPC4O75487 556 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 RFPL2O75678 378 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 EGFP01133 1207 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 LDHCP07864 332 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 ACAA1P09110 424 aaPredicted RBP3.35□□□□□ -1.87
HMGB1-201ENST00000326004 T-ENOLP0DO92 83 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 DAOP14920 347 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 PON1P27169 355 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 ACADLP28330 430 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 BDKRB2P30411 391 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 SSTR2P30874 369 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 CLCNKAP51800 687 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 TUBA1BP68363 451 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 IKQ13123 557 aaPredicted RBP3.35□□□□□ -1.87
HMGB1-201ENST00000326004 MAD2L1Q13257 205 aaPredicted RBP3.35□□□□□ -1.87
HMGB1-201ENST00000326004 DHX34Q14147 1143 aaKnown RBP3.35□□□□□ -1.87
HMGB1-201ENST00000326004 IRF3Q14653 427 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 RAB41Q5JT25 222 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 KIAA0930Q6ICG6 404 aaPredicted RBP3.35□□□□□ -1.87
HMGB1-201ENST00000326004 DUS1LQ6P1R4 473 aaKnown RBP3.35□□□□□ -1.87
HMGB1-201ENST00000326004 CCNI2Q6ZMN8 369 aaPredicted RBP3.35□□□□□ -1.87
HMGB1-201ENST00000326004 CFAP77Q6ZQR2 320 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 ZDHHC17Q8IUH5 632 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 SPATA2LQ8IUW3 424 aaPredicted RBP3.35□□□□□ -1.87
HMGB1-201ENST00000326004 CHERPQ8IWX8 916 aaKnown RBP3.35□□□□□ -1.87
HMGB1-201ENST00000326004 SAMD14Q8IZD0 417 aaPredicted RBP3.35□□□□□ -1.87
HMGB1-201ENST00000326004 TMTC2Q8N394 836 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 NME8Q8N427 588 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 APBB2Q92870 758 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 ELMOD3Q96FG2 381 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 CALML4Q96GE6 196 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 THOC3Q96J01 351 aaKnown RBP3.35□□□□□ -1.87
HMGB1-201ENST00000326004 MARK4Q96L34 752 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 NUDT16L1Q9BRJ7 211 aaKnown RBP3.35□□□□□ -1.87
HMGB1-201ENST00000326004 ZPBPQ9BS86 351 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 WACQ9BTA9 647 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 TM6SF1Q9BZW5 370 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 PLK3Q9H4B4 646 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 NOX4Q9NPH5 578 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 SMARCAL1Q9NZC9 954 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 SUCLA2Q9P2R7 463 aaPredicted RBP3.35□□□□□ -1.87
HMGB1-201ENST00000326004 COPG2Q9UBF2 871 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 STK39Q9UEW8 545 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 R3HDM2Q9Y2K5 976 aaKnown RBP3.35□□□□□ -1.87
HMGB1-201ENST00000326004 SNX9Q9Y5X1 595 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 CLIC4Q9Y696 253 aa3.35□□□□□ -1.87
HMGB1-201ENST00000326004 ZNF644Q9H582 1327 aaPredicted RBP3.35□□□□□ -1.87
HMGB1-201ENST00000326004 KIF21AQ7Z4S6 1674 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 hCG_1807616A0A1W2PRN6 198 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 B4DLN1 442 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms