RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 SPACA6W5XKT8 324 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 TRIM64CA6NLI5 447 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 LINC00032P0C843 101 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 SMIM11AP58511 58 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 RPL38P63173 70 aaKnown RBP11.48□□□□□ -0.57
VPS39-201ENST00000318006 TUBA1BP68363 451 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 HSF2Q03933 536 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 EML3Q32P44 896 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 TUBA1AQ71U36 451 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 MON1BQ7L1V2 547 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 STK40Q8N2I9 435 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 REPS1Q96D71 796 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 SLC38A2Q96QD8 506 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 FBXO5Q9UKT4 447 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 ULK1O75385 1050 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 PRKD3O94806 890 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 COL6A2P12110 1019 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 IGFBP5P24593 272 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 MYL9P24844 172 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 KLRC2P26717 231 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 RNASEH2BQ5TBB1 312 aaKnown RBP11.48□□□□□ -0.57
VPS39-201ENST00000318006 ERICH5Q6P6B1 374 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 TDRD1Q9BXT4 1180 aaKnown RBP11.48□□□□□ -0.57
VPS39-201ENST00000318006 IFT80Q9P2H3 777 aaPredicted RBP11.48□□□□□ -0.57
VPS39-201ENST00000318006 FETUBQ9UGM5 382 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 SAMD4AQ9UPU9 718 aaKnown RBP11.48□□□□□ -0.57
VPS39-201ENST00000318006 SMIM28A0A1B0GU29 152 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 RNASEH1O60930 286 aaKnown RBP11.48□□□□□ -0.57
VPS39-201ENST00000318006 IGSF6O95976 241 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 CHRNGP07510 517 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 TUBA3CQ13748 450 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 SIM2Q14190 667 aaPredicted RBP11.48□□□□□ -0.57
VPS39-201ENST00000318006 NOMO1Q15155 1222 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 RAP1GAP2Q684P5 730 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 SLC9A4Q6AI14 798 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 DCLRE1AQ6PJP8 1040 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 TXNDC11Q6PKC3 985 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 ZNF467Q7Z7K2 595 aaPredicted RBP11.48□□□□□ -0.57
VPS39-201ENST00000318006 ERLEC1Q96DZ1 483 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 CAPN10Q9HC96 672 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 ZDHHC18Q9NUE0 388 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 H3BSA7 217 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 SLC28A1O00337 649 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 AMHP03971 560 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 HNF4AP41235 474 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 IDH3AP50213 366 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 BCL2L1Q07817 233 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 PTP4A2Q12974 167 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 HERC3Q15034 1050 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 SLC25A52Q3SY17 297 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 PABPC1LQ4VXU2 614 aaKnown RBP11.47□□□□□ -0.57
VPS39-201ENST00000318006 ZDHHC24Q6UX98 284 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 CXXC5Q7LFL8 322 aaKnown RBP11.47□□□□□ -0.57
VPS39-201ENST00000318006 STRADAQ7RTN6 431 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 SPATA19Q7Z5L4 167 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 C1orf127Q8N9H9 656 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 ELMO1Q92556 727 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 NELL1Q92832 810 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 DIRAS2Q96HU8 199 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 C12orf42Q96LP6 360 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 NTPCRQ9BSD7 190 aaKnown RBP11.47□□□□□ -0.57
VPS39-201ENST00000318006 FTHL17Q9BXU8 183 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 MED28Q9H204 178 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 CAB39LQ9H9S4 337 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 CD320Q9NPF0 282 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 XPNPEP1Q9NQW7 623 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 SNX6Q9UNH7 406 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 U3KQV3 271 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 KDM3BQ7LBC6 1761 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 CASKO14936 926 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 TBX1O43435 398 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 PSIP1O75475 530 aaKnown RBP11.47□□□□□ -0.57
VPS39-201ENST00000318006 TPSB2P20231 275 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 SDC2P34741 201 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 PEX6Q13608 980 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 TPSAB1Q15661 275 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 ARMC12Q5T9G4 340 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 SCIMPQ6UWF3 145 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 PTCHD4Q6ZW05 846 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 ANKRD23Q86SG2 305 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 GPR180Q86V85 440 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 XYLT1Q86Y38 959 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 PANX3Q96QZ0 392 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 PDCD10Q9BUL8 212 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 ZYG11BQ9C0D3 744 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 SLC7A5P2Q9GIP4 190 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 RNF208Q9H0X6 261 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 TTYH1Q9H313 450 aaPredicted RBP11.47□□□□□ -0.57
VPS39-201ENST00000318006 TPK1Q9H3S4 243 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 RASSF1Q9NS23 344 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 NR2E1Q9Y466 385 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 BTBD19C9JJ37 291 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 AGRPO00253 132 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 PGRMC2O15173 223 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 PLIN3O60664 434 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 ATF6P18850 670 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 DGKAP23743 735 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 PSMA1P25786 263 aaKnown RBP11.47□□□□□ -0.57
VPS39-201ENST00000318006 PBLDP30039 288 aaPredicted RBP11.47□□□□□ -0.57
VPS39-201ENST00000318006 TIE1P35590 1138 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms