RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 PAX6P26367 422 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 TAF9Q16594 264 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 XRRA1Q6P2D8 792 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 MB21D2Q8IYB1 491 aaPredicted RBP7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 DEFB107AQ8IZN7 70 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 BOLLQ8N9W6 283 aaKnown RBP7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 OR6K6Q8NGW6 343 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 RHPN1Q8TCX5 695 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 MTFMTQ96DP5 389 aaKnown RBP7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 CNPPD1Q9BV87 410 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 REEP4Q9H6H4 257 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 FZD3Q9NPG1 666 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 IL1RAPQ9NPH3 570 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 OR2S2Q9NQN1 319 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 MGAT4CQ9UBM8 478 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 PCDHB8Q9UN66 801 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 C20orf202A1L168 122 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 JAK2O60674 1132 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 BANF1O75531 89 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 NR4A1P22736 598 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 UGT1A5P35504 534 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 POLR2HP52434 150 aaKnown RBP7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 RAB8AP61006 207 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 SPOCK1Q08629 439 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 TEAD4Q15561 434 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 FAM46CQ5VWP2 391 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 DHFR2Q86XF0 187 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 NOA1Q8NC60 698 aaKnown RBP7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 CAMKVQ8NCB2 501 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 GTF2H4Q92759 462 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 CLIC6Q96NY7 704 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 SLC38A2Q96QD8 506 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 PAK6Q9NQU5 681 aaPredicted RBP7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 SORCS3Q9UPU3 1222 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 PZPP20742 1482 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 LOC105378220A0A1B0GUY1 285 aaPredicted RBP7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 EFCAB9A8MZ26 197 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 TMEM114B3SHH9 223 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 ZIC2O95409 532 aaPredicted RBP7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 GTF2F2P13984 249 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 GPD1P21695 349 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 GKP32189 559 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 PSMC2P35998 433 aaKnown RBP7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 SPDYCQ5MJ68 293 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 GPATCH4Q5T3I0 446 aaKnown RBP7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 FOXR2Q6PJQ5 311 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 XKR5Q6UX68 686 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 ETV3LQ6ZN32 361 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 ZNF720Q7Z2F6 126 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 P4HA3Q7Z4N8 544 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 TMED4Q7Z7H5 227 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 SLC34A3Q8N130 599 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 FBXO32Q969P5 355 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 NDNQ99608 321 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 RUSC1Q9BVN2 902 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 DNTTIP1Q9H147 329 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 POMKQ9H5K3 350 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 BCAS3Q9H6U6 928 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 PCDHB6Q9Y5E3 794 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 CLDN25C9JDP6 229 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 GRIA2P42262 883 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 TLE3Q04726 772 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 SULT2A1Q06520 285 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 CHRNDQ07001 517 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 TFDP1Q14186 410 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 GALEQ14376 348 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 COL28A1Q2UY09 1125 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 MYLK3Q32MK0 819 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 IDNKQ5T6J7 187 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 AGAP7PQ5VUJ5 663 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 AGAP6Q5VW22 663 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 SEMA6DQ8NFY4 1073 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 OR10H5Q8NGA6 315 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 TBCKQ8TEA7 893 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 ELMO3Q96BJ8 720 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 OTUB2Q96DC9 234 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 MED8Q96G25 268 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 SLC41A2Q96JW4 573 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 AGAP4Q96P64 663 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 RNF157Q96PX1 679 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 CATSPERBQ9H7T0 1116 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 GCM1Q9NP62 436 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 NMRK1Q9NWW6 199 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 ASH2LQ9UBL3 628 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 MAP3K5Q99683 1374 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 E7ENX8 843 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 DCNP07585 359 aaKnown RBP7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 ANPEPP15144 967 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 ME2P23368 584 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 NPY1RP25929 384 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 CDC34P49427 236 aaPredicted RBP7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 TAS2R60P59551 318 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 ZNF200P98182 395 aaPredicted RBP7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 GRIK2Q13002 908 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 PDK3Q15120 406 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 UGT8Q16880 541 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 AGKQ53H12 422 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 PDSS1Q5T2R2 415 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 PDPK2PQ6A1A2 396 aa7.61□□□□□ -1.19
LIMCH1-201ENST00000313860 COMMD7Q86VX2 200 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms