RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 OR5F1O95221 314 aa7.78□□□□□ -1.16
SCN9A-201ENST00000303354 IL6P05231 212 aa7.78□□□□□ -1.16
SCN9A-201ENST00000303354 UQCRBP14927 111 aa7.78□□□□□ -1.16
SCN9A-201ENST00000303354 PDHA2P29803 388 aa7.78□□□□□ -1.16
SCN9A-201ENST00000303354 FKBP1BP68106 108 aa7.78□□□□□ -1.16
SCN9A-201ENST00000303354 ILF3Q12906 894 aaKnown RBP eCLIP7.78□□□□□ -1.164e-7■□□□□ 9.4
SCN9A-201ENST00000303354 ATP1A4Q13733 1029 aa7.78□□□□□ -1.16
SCN9A-201ENST00000303354 RRP1BQ14684 758 aaKnown RBP7.78□□□□□ -1.16
SCN9A-201ENST00000303354 MAPKAPK3Q16644 382 aa7.78□□□□□ -1.16
SCN9A-201ENST00000303354 ARSHQ5FYA8 562 aa7.78□□□□□ -1.16
SCN9A-201ENST00000303354 PPP1R15BQ5SWA1 713 aa7.78□□□□□ -1.16
SCN9A-201ENST00000303354 TRIM40Q6P9F5 258 aa7.78□□□□□ -1.16
SCN9A-201ENST00000303354 AMIGO2Q86SJ2 522 aa7.78□□□□□ -1.16
SCN9A-201ENST00000303354 ALYREFQ86V81 257 aaKnown RBP7.78□□□□□ -1.16
SCN9A-201ENST00000303354 XYLT1Q86Y38 959 aa7.78□□□□□ -1.16
SCN9A-201ENST00000303354 OR52L1Q8NGH7 329 aa7.78□□□□□ -1.16
SCN9A-201ENST00000303354 ADAMTS15Q8TE58 950 aa7.78□□□□□ -1.16
SCN9A-201ENST00000303354 ZNF75CPQ92670 426 aaPredicted RBP7.78□□□□□ -1.16
SCN9A-201ENST00000303354 PYCR2Q96C36 320 aa7.78□□□□□ -1.16
SCN9A-201ENST00000303354 GPR21Q99679 349 aa7.78□□□□□ -1.16
SCN9A-201ENST00000303354 C11orf84Q9BUA3 381 aaPredicted RBP7.78□□□□□ -1.16
SCN9A-201ENST00000303354 IL22Q9GZX6 179 aa7.78□□□□□ -1.16
SCN9A-201ENST00000303354 CYP1A1P04798 512 aaPredicted RBP7.78□□□□□ -1.16
SCN9A-201ENST00000303354 JMJD7P0C870 316 aa7.78□□□□□ -1.16
SCN9A-201ENST00000303354 CMPK1P30085 196 aa7.78□□□□□ -1.16
SCN9A-201ENST00000303354 HOXA10P31260 410 aaPredicted RBP7.78□□□□□ -1.16
SCN9A-201ENST00000303354 MATKP42679 507 aa7.78□□□□□ -1.16
SCN9A-201ENST00000303354 GCNT1Q02742 428 aa7.78□□□□□ -1.16
SCN9A-201ENST00000303354 OR4E2Q8NGC2 313 aa7.78□□□□□ -1.16
SCN9A-201ENST00000303354 OLFM3Q96PB7 478 aa7.78□□□□□ -1.16
SCN9A-201ENST00000303354 PRKD2Q9BZL6 878 aa7.78□□□□□ -1.16
SCN9A-201ENST00000303354 CREBZFQ9NS37 354 aa7.78□□□□□ -1.16
SCN9A-201ENST00000303354 XPR1Q9UBH6 696 aa7.78□□□□□ -1.16
SCN9A-201ENST00000303354 APOC4-APOC2K7ER74 178 aa7.77□□□□□ -1.16
SCN9A-201ENST00000303354 PLK4O00444 970 aa7.77□□□□□ -1.16
SCN9A-201ENST00000303354 LIASO43766 372 aa7.77□□□□□ -1.16
SCN9A-201ENST00000303354 CDC40O60508 579 aaKnown RBP eCLIP7.77□□□□□ -1.16
SCN9A-201ENST00000303354 ULK1O75385 1050 aa7.77□□□□□ -1.16
SCN9A-201ENST00000303354 APOC2P02655 101 aa7.77□□□□□ -1.16
SCN9A-201ENST00000303354 MT-ND1P03886 318 aa7.77□□□□□ -1.16
SCN9A-201ENST00000303354 GRB14Q14449 540 aa7.77□□□□□ -1.16
SCN9A-201ENST00000303354 SERPINA9Q86WD7 417 aa7.77□□□□□ -1.16
SCN9A-201ENST00000303354 STK40Q8N2I9 435 aa7.77□□□□□ -1.16
SCN9A-201ENST00000303354 TOP6BLQ8N6T0 577 aa7.77□□□□□ -1.16
SCN9A-201ENST00000303354 SUN3Q8TAQ9 357 aa7.77□□□□□ -1.16
SCN9A-201ENST00000303354 ETNPPLQ8TBG4 499 aa7.77□□□□□ -1.16
SCN9A-201ENST00000303354 TOP1MTQ969P6 601 aa7.77□□□□□ -1.16
SCN9A-201ENST00000303354 HEPHQ9BQS7 1158 aa7.77□□□□□ -1.16
SCN9A-201ENST00000303354 ATAD3AQ9NVI7 634 aa7.77□□□□□ -1.16
SCN9A-201ENST00000303354 FTSJ1Q9UET6 329 aa7.77□□□□□ -1.16
SCN9A-201ENST00000303354 CASZ1Q86V15 1759 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 A6NL46 340 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 PPEF2O14830 753 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 LIN7AO14910 233 aaPredicted RBP7.77□□□□□ -1.17
SCN9A-201ENST00000303354 PRMT3O60678 531 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 SERPINE1P05121 402 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 VEGFBP49765 207 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 SH3BGRP55822 239 aaPredicted RBP7.77□□□□□ -1.17
SCN9A-201ENST00000303354 MCL1Q07820 350 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 SMARCD3Q6STE5 483 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 LBX2Q6XYB7 198 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 TTC29Q8NA56 475 aaPredicted RBP7.77□□□□□ -1.17
SCN9A-201ENST00000303354 NXNL1Q96CM4 212 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 PRR11Q96HE9 360 aaPredicted RBP7.77□□□□□ -1.17
SCN9A-201ENST00000303354 OR52E6Q96RD3 313 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 SH3GL1Q99961 368 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.77□□□□□ -1.17
SCN9A-201ENST00000303354 REEP1Q9H902 201 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 ARHGEF33A8MVX0 844 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 FOXP2O15409 715 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 PGM3O95394 542 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 PRAMEF1O95521 474 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 C22orf31O95567 290 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 C8orf89P0DMQ9 161 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 FOSL2P15408 326 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 MAPKAPK2P49137 400 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 GDI2P50395 445 aaKnown RBP7.77□□□□□ -1.17
SCN9A-201ENST00000303354 ID2Q02363 134 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 TAPT1Q6NXT6 567 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 FAM220AQ7Z4H9 259 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 NANOGNBQ7Z5D8 188 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 OR10H5Q8NGA6 315 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 CEP295NLQ96MC4 621 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 PCDHB18PQ96TA0 734 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 DDX18Q9NVP1 670 aaKnown RBP7.77□□□□□ -1.17
SCN9A-201ENST00000303354 FKBPLQ9UIM3 349 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 PHF24Q9UPV7 400 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 SLC28A1O00337 649 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 CDC123O75794 336 aaPredicted RBP7.77□□□□□ -1.17
SCN9A-201ENST00000303354 BMP7P18075 431 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 MAGP20916 626 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 AUHQ13825 339 aaKnown RBP7.77□□□□□ -1.17
SCN9A-201ENST00000303354 TBC1D25Q3MII6 688 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 GPRIN3Q6ZVF9 776 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 CHSY3Q70JA7 882 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 UBE2J2Q8N2K1 259 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 TMEM145Q8NBT3 493 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 GDPD5Q8WTR4 605 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 SIPA1Q96FS4 1042 aa7.77□□□□□ -1.17
SCN9A-201ENST00000303354 FCRL4Q96PJ5 515 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms