RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 NT5C3BQ969T7 300 aa10.32□□□□□ -0.76
UPF3B-201ENST00000276201 COG8Q96MW5 612 aa10.32□□□□□ -0.76
UPF3B-201ENST00000276201 MRPL57Q9BQC6 102 aaKnown RBP10.32□□□□□ -0.76
UPF3B-201ENST00000276201 GPATCH1Q9BRR8 931 aaKnown RBP10.32□□□□□ -0.76
UPF3B-201ENST00000276201 COL25A1Q9BXS0 654 aaPredicted RBP10.32□□□□□ -0.76
UPF3B-201ENST00000276201 CXorf21Q9HAI6 301 aa10.32□□□□□ -0.76
UPF3B-201ENST00000276201 ABCD2Q9UBJ2 740 aa10.32□□□□□ -0.76
UPF3B-201ENST00000276201 EBF1Q9UH73 591 aa10.32□□□□□ -0.76
UPF3B-201ENST00000276201 FADS3Q9Y5Q0 445 aa10.32□□□□□ -0.76
UPF3B-201ENST00000276201 VCANP13611 3396 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 PRORSD1PA6NEY8 169 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 KCNU1A8MYU2 1149 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 PLOD2O00469 737 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 DCLK1O15075 740 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 DAB1O75553 588 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 SULT1C4O75897 302 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 SNRPB2P08579 225 aaKnown RBP10.31□□□□□ -0.76
UPF3B-201ENST00000276201 RGS7P49802 495 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 ZNF135P52742 658 aaPredicted RBP10.31□□□□□ -0.76
UPF3B-201ENST00000276201 NAGLUP54802 743 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 ARPP19P56211 112 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 C21orf59P57076 290 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 ATP6V0D1P61421 351 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 CBX2Q14781 532 aaPredicted RBP10.31□□□□□ -0.76
UPF3B-201ENST00000276201 COQ5Q5HYK3 327 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 NXNQ6DKJ4 435 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 ITPRIPL1Q6GPH6 555 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 LCN8Q6JVE9 175 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 TTC33Q6PID6 262 aaPredicted RBP10.31□□□□□ -0.76
UPF3B-201ENST00000276201 CENPLQ8N0S6 344 aaPredicted RBP10.31□□□□□ -0.76
UPF3B-201ENST00000276201 CCDC185Q8N715 623 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 LEMD2Q8NC56 503 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 OR52K1Q8NGK4 314 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 ZNF707Q96C28 371 aaPredicted RBP10.31□□□□□ -0.76
UPF3B-201ENST00000276201 AGAP2Q99490 1192 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 OLFM1Q99784 485 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 HOPXQ9BPY8 73 aaPredicted RBP10.31□□□□□ -0.76
UPF3B-201ENST00000276201 RTP3Q9BQQ7 232 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 ADI1Q9BV57 179 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 GBA3Q9H227 469 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 MRPL46Q9H2W6 279 aaKnown RBP10.31□□□□□ -0.76
UPF3B-201ENST00000276201 LIN28AQ9H9Z2 209 aaKnown RBP10.31□□□□□ -0.76
UPF3B-201ENST00000276201 INIPQ9NRY2 104 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 AGPAT4Q9NRZ5 378 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 GDAP2Q9NXN4 497 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 NCKIPSDQ9NZQ3 722 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 SEPT3Q9UH03 358 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 SNX13Q9Y5W8 968 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 CUL9Q8IWT3 2517 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 NCOR1O75376 2440 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 TK2O00142 265 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 SOCS2O14508 198 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 SUPT3HO75486 399 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 ABLIM3O94929 683 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 RASAL1O95294 804 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 PAPLNO95428 1278 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 OR4Q2P0C623 313 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 TFE3P19532 575 aaPredicted RBP10.31□□□□□ -0.76
UPF3B-201ENST00000276201 ATP5F1P24539 256 aaPredicted RBP10.31□□□□□ -0.76
UPF3B-201ENST00000276201 PTPN3P26045 913 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 MSX2P35548 267 aaPredicted RBP10.31□□□□□ -0.76
UPF3B-201ENST00000276201 MATKP42679 507 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 CD151P48509 253 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 NAA20P61599 178 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 ZNF33AQ06730 810 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 FOXM1Q08050 763 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 BST2Q10589 180 aaKnown RBP10.31□□□□□ -0.76
UPF3B-201ENST00000276201 MERTKQ12866 999 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 FASTKQ14296 549 aaKnown RBP10.31□□□□□ -0.76
UPF3B-201ENST00000276201 INPP5AQ14642 412 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 GRM3Q14832 879 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 DLG2Q15700 870 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 SLC25A52Q3SY17 297 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 TSTD2Q5T7W7 516 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 CES5AQ6NT32 575 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 GK5Q6ZS86 529 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 USP51Q70EK9 711 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 GPR149Q86SP6 731 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 SCUBE3Q8IX30 993 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 FSTL5Q8N475 847 aaPredicted RBP10.31□□□□□ -0.76
UPF3B-201ENST00000276201 MINDY2Q8NBR6 621 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 PAPD5Q8NDF8 572 aaKnown RBP10.31□□□□□ -0.76
UPF3B-201ENST00000276201 OR10T2Q8NGX3 314 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 GRIN3AQ8TCU5 1115 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 RNF139Q8WU17 664 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 LRRN4Q8WUT4 740 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.31□□□□□ -0.765e-7■■■■■ 55
UPF3B-201ENST00000276201 THAP11Q96EK4 314 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 TMEM209Q96SK2 561 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 UNKQ9C0B0 810 aaKnown RBP10.31□□□□□ -0.76
UPF3B-201ENST00000276201 EML4Q9HC35 981 aaKnown RBP10.31□□□□□ -0.76
UPF3B-201ENST00000276201 DPP7Q9UHL4 492 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 DSEQ9UL01 958 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 RUVBL2Q9Y230 463 aaKnown RBP10.31□□□□□ -0.76
UPF3B-201ENST00000276201 ACOT9Q9Y305 439 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 MTF2Q9Y483 593 aaPredicted RBP10.31□□□□□ -0.76
UPF3B-201ENST00000276201 MFHAS1Q9Y4C4 1052 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 SNX9Q9Y5X1 595 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 C2orf16Q68DN1 1984 aa10.31□□□□□ -0.76
UPF3B-201ENST00000276201 OR6C75A6NL08 312 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms