RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 ZNF45Q02386 682 aa9.2□□□□□ -0.94
PDGFC-201ENST00000274071 TNK1Q13470 666 aa9.2□□□□□ -0.94
PDGFC-201ENST00000274071 PCBP1Q15365 356 aaKnown RBP eCLIP9.2□□□□□ -0.94
PDGFC-201ENST00000274071 CA9Q16790 459 aa9.2□□□□□ -0.94
PDGFC-201ENST00000274071 TFDP3Q5H9I0 405 aa9.2□□□□□ -0.94
PDGFC-201ENST00000274071 TXNRD3NBQ6F5E7 133 aa9.2□□□□□ -0.94
PDGFC-201ENST00000274071 GK5Q6ZS86 529 aa9.2□□□□□ -0.94
PDGFC-201ENST00000274071 NIPA1Q7RTP0 329 aa9.2□□□□□ -0.94
PDGFC-201ENST00000274071 THAP5Q7Z6K1 395 aa9.2□□□□□ -0.94
PDGFC-201ENST00000274071 P2RY8Q86VZ1 359 aa9.2□□□□□ -0.94
PDGFC-201ENST00000274071 KIF18BQ86Y91 864 aa9.2□□□□□ -0.94
PDGFC-201ENST00000274071 RAB43Q86YS6 212 aa9.2□□□□□ -0.94
PDGFC-201ENST00000274071 SPPL2CQ8IUH8 684 aa9.2□□□□□ -0.94
PDGFC-201ENST00000274071 CCDC36Q8IYA8 594 aa9.2□□□□□ -0.94
PDGFC-201ENST00000274071 KIAA1958Q8N8K9 716 aa9.2□□□□□ -0.94
PDGFC-201ENST00000274071 TMC2Q8TDI7 906 aa9.2□□□□□ -0.94
PDGFC-201ENST00000274071 FAR1Q8WVX9 515 aa9.2□□□□□ -0.94
PDGFC-201ENST00000274071 C12orf57Q99622 126 aa9.2□□□□□ -0.94
PDGFC-201ENST00000274071 C6orf62Q9GZU0 229 aaPredicted RBP9.2□□□□□ -0.94
PDGFC-201ENST00000274071 ANKHQ9HCJ1 492 aa9.2□□□□□ -0.94
PDGFC-201ENST00000274071 ENTPD7Q9NQZ7 604 aa9.2□□□□□ -0.94
PDGFC-201ENST00000274071 CCDC59Q9P031 241 aaKnown RBP9.2□□□□□ -0.94
PDGFC-201ENST00000274071 TMEM181Q9P2C4 612 aa9.2□□□□□ -0.94
PDGFC-201ENST00000274071 PCDHB3Q9Y5E6 796 aa9.2□□□□□ -0.94
PDGFC-201ENST00000274071 PCDHGB6Q9Y5F9 930 aa9.2□□□□□ -0.94
PDGFC-201ENST00000274071 SNX5Q9Y5X3 404 aa9.2□□□□□ -0.94
PDGFC-201ENST00000274071 ANKRD31Q8N7Z5 1873 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 ZNFX1Q9P2E3 1918 aaKnown RBP9.19□□□□□ -0.94
PDGFC-201ENST00000274071 GZMKP49863 264 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 SEMA3AQ14563 771 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 WDR44Q5JSH3 913 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 C6orf141Q5SZD1 244 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 TYW3Q6IPR3 259 aaKnown RBP9.19□□□□□ -0.94
PDGFC-201ENST00000274071 ZBTB33Q86T24 672 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 CDH26Q8IXH8 852 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 TNS4Q8IZW8 715 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 ZMIZ2Q8NF64 920 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 AKAP1Q92667 903 aaKnown RBP eCLIP9.19□□□□□ -0.94
PDGFC-201ENST00000274071 RPL3LQ92901 407 aaKnown RBP9.19□□□□□ -0.94
PDGFC-201ENST00000274071 NODALQ96S42 347 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 PIGSQ96S52 555 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 CPXM1Q96SM3 734 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 ZNF577Q9BSK1 485 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 CCDC90BQ9GZT6 254 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 COA1Q9GZY4 146 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 NUAK2Q9H093 628 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 POPDC2Q9HBU9 364 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 CACNA2D2Q9NY47 1150 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 DCDC2Q9UHG0 476 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 GTF2IRD1Q9UHL9 959 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 SARDHQ9UL12 918 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 TMEM5Q9Y2B1 443 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 CCDC154A6NI56 674 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 E5RI56 91 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 ADORA3P0DMS8 318 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 STMN1P16949 149 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 HDCP19113 662 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 TNNI3P19429 210 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 PTX3P26022 381 aaPredicted RBP9.19□□□□□ -0.94
PDGFC-201ENST00000274071 OXTRP30559 389 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 CDKN2BP42772 138 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 CDK8P49336 464 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 ALDH6A1Q02252 535 aaKnown RBP9.19□□□□□ -0.94
PDGFC-201ENST00000274071 MAMLD1Q13495 774 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 ELOAQ14241 798 aaKnown RBP9.19□□□□□ -0.94
PDGFC-201ENST00000274071 MEP1AQ16819 746 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 BTBD16Q32M84 506 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 METTL11BQ5VVY1 283 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 USP17L6PQ6QN14 398 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 DPP8Q6V1X1 898 aaPredicted RBP9.19□□□□□ -0.94
PDGFC-201ENST00000274071 PLD3Q8IV08 490 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 ZNF557Q8N988 423 aaPredicted RBP9.19□□□□□ -0.94
PDGFC-201ENST00000274071 WDR48Q8TAF3 677 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 DHX38Q92620 1227 aaKnown RBP9.19□□□□□ -0.94
PDGFC-201ENST00000274071 YIPF6Q96EC8 236 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 RPRD1AQ96P16 312 aaPredicted RBP9.19□□□□□ -0.94
PDGFC-201ENST00000274071 RBM14Q96PK6 669 aaKnown RBP9.19□□□□□ -0.94
PDGFC-201ENST00000274071 ACAD9Q9H845 621 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 ZNF358Q9NW07 568 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 C14orf119Q9NWQ9 140 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 KCTD5Q9NXV2 234 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 SLC39A1Q9NY26 324 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 PSAT1Q9Y617 370 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 NAV1Q8NEY1 1877 aa9.19□□□□□ -0.94
PDGFC-201ENST00000274071 CYP3A7-CYP3A51PA0A087WV96 503 aa9.18□□□□□ -0.94
PDGFC-201ENST00000274071 TRAV20A0A0B4J274 112 aa9.18□□□□□ -0.94
PDGFC-201ENST00000274071 H3BQ06 376 aaPredicted RBP9.18□□□□□ -0.94
PDGFC-201ENST00000274071 TPP1O14773 563 aa9.18□□□□□ -0.94
PDGFC-201ENST00000274071 TLR3O15455 904 aaKnown RBP9.18□□□□□ -0.94
PDGFC-201ENST00000274071 NRP2O60462 931 aa9.18□□□□□ -0.94
PDGFC-201ENST00000274071 NDUFS6O75380 124 aaKnown RBP9.18□□□□□ -0.94
PDGFC-201ENST00000274071 PIGNO95427 931 aa9.18□□□□□ -0.94
PDGFC-201ENST00000274071 CHRNGP07510 517 aa9.18□□□□□ -0.94
PDGFC-201ENST00000274071 CYP3A7P24462 503 aa9.18□□□□□ -0.94
PDGFC-201ENST00000274071 DNAJB1P25685 340 aa9.18□□□□□ -0.94
PDGFC-201ENST00000274071 RGS7P49802 495 aa9.18□□□□□ -0.94
PDGFC-201ENST00000274071 YWHAZP63104 245 aaKnown RBP9.18□□□□□ -0.94
PDGFC-201ENST00000274071 RUNX1T1Q06455 604 aa9.18□□□□□ -0.94
PDGFC-201ENST00000274071 DOK7Q18PE1 504 aa9.18□□□□□ -0.94
PDGFC-201ENST00000274071 FBXO43Q4G163 708 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms