RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 TYRP14679 529 aa15.25■□□□□ 0.03
SF3B4-201ENST00000271628 MYOGP15173 224 aa15.25■□□□□ 0.03
SF3B4-201ENST00000271628 ZNF37AP17032 561 aaPredicted RBP15.25■□□□□ 0.03
SF3B4-201ENST00000271628 TFEBP19484 476 aa15.25■□□□□ 0.03
SF3B4-201ENST00000271628 RAD51Q06609 339 aa15.25■□□□□ 0.03
SF3B4-201ENST00000271628 USP4Q13107 963 aa15.25■□□□□ 0.03
SF3B4-201ENST00000271628 PEX6Q13608 980 aa15.25■□□□□ 0.03
SF3B4-201ENST00000271628 ZRANB3Q5FWF4 1079 aa15.25■□□□□ 0.03
SF3B4-201ENST00000271628 ARL13AQ5H913 290 aaPredicted RBP15.25■□□□□ 0.03
SF3B4-201ENST00000271628 CAPRIN2Q6IMN6 1127 aaKnown RBP15.25■□□□□ 0.03
SF3B4-201ENST00000271628 CERS6Q6ZMG9 384 aa15.25■□□□□ 0.03
SF3B4-201ENST00000271628 ISCA2Q86U28 154 aa15.25■□□□□ 0.03
SF3B4-201ENST00000271628 ADGRG2Q8IZP9 1017 aa15.25■□□□□ 0.03
SF3B4-201ENST00000271628 PCDH20Q8N6Y1 951 aaKnown RBP15.25■□□□□ 0.03
SF3B4-201ENST00000271628 KIAA1958Q8N8K9 716 aa15.25■□□□□ 0.03
SF3B4-201ENST00000271628 OR6K2Q8NGY2 324 aa15.25■□□□□ 0.03
SF3B4-201ENST00000271628 RHEBL1Q8TAI7 183 aa15.25■□□□□ 0.03
SF3B4-201ENST00000271628 RIN3Q8TB24 985 aa15.25■□□□□ 0.03
SF3B4-201ENST00000271628 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.25■□□□□ 0.03
SF3B4-201ENST00000271628 CCDC106Q9BWC9 280 aa15.25■□□□□ 0.03
SF3B4-201ENST00000271628 SLC2A11Q9BYW1 496 aa15.25■□□□□ 0.03
SF3B4-201ENST00000271628 UNKQ9C0B0 810 aaKnown RBP15.25■□□□□ 0.03
SF3B4-201ENST00000271628 POMKQ9H5K3 350 aa15.25■□□□□ 0.03
SF3B4-201ENST00000271628 COG4Q9H9E3 785 aa15.25■□□□□ 0.03
SF3B4-201ENST00000271628 BPIFA1Q9NP55 256 aa15.25■□□□□ 0.03
SF3B4-201ENST00000271628 CHD7Q9P2D1 2997 aa15.25■□□□□ 0.03
SF3B4-201ENST00000271628 A0A1W2PQ67 120 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 SPECC1L-ADORA2AF8WAN1 911 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 PER2O15055 1255 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 RHOBTB1O94844 696 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 PIGNO95427 931 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 PRAMEF12O95522 483 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 CA3P07451 260 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 PABPC1P11940 636 aaKnown RBP15.24■□□□□ 0.03
SF3B4-201ENST00000271628 CTPS1P17812 591 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 FMO4P31512 558 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 PTGER3P43115 390 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 NTHL1P78549 312 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 ECT2LQ008S8 904 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 CACNG1Q06432 222 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 GPM6BQ13491 265 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 FUT11Q495W5 492 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 METTL21CQ5VZV1 264 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 EPGNQ6UW88 154 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 TRIM67Q6ZTA4 783 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 NET1Q7Z628 596 aaPredicted RBP15.24■□□□□ 0.03
SF3B4-201ENST00000271628 PIM3Q86V86 326 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 TREML1Q86YW5 311 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 APLFQ8IW19 511 aaPredicted RBP15.24■□□□□ 0.03
SF3B4-201ENST00000271628 TXNDC5Q8NBS9 432 aaKnown RBP15.24■□□□□ 0.03
SF3B4-201ENST00000271628 STON2Q8WXE9 905 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 SPDL1Q96EA4 605 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 SGF29Q96ES7 293 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 TTC1Q99614 292 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 CPEB1Q9BZB8 566 aaKnown RBP15.24■□□□□ 0.03
SF3B4-201ENST00000271628 TNKS2Q9H2K2 1166 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 APPL1Q9UKG1 709 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 MRPS23Q9Y3D9 190 aaKnown RBP15.24■□□□□ 0.03
SF3B4-201ENST00000271628 NOTCH4Q99466 2003 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 MATN2O00339 956 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 HDAC3O15379 428 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 TM7SF2O76062 418 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 ARHGEF15O94989 841 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 ENO1P06733 434 aaKnown RBP15.24■□□□□ 0.03
SF3B4-201ENST00000271628 ALPIP09923 528 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 PRSS56P0CW18 603 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 PKMP14618 531 aaKnown RBP15.24■□□□□ 0.03
SF3B4-201ENST00000271628 CD1DP15813 335 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 ALDH18A1P54886 795 aaKnown RBP15.24■□□□□ 0.03
SF3B4-201ENST00000271628 XIAPP98170 497 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 TIAL1Q01085 375 aaKnown RBP eCLIP15.24■□□□□ 0.03
SF3B4-201ENST00000271628 GALNT1Q10472 559 aaPredicted RBP15.24■□□□□ 0.03
SF3B4-201ENST00000271628 TUBB3Q13509 450 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 PTPRNQ16849 979 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 MYLK3Q32MK0 819 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 C6orf163Q5TEZ5 329 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 SEL1L3Q68CR1 1132 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 ANO7Q6IWH7 933 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 PSAPL1Q6NUJ1 521 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 C22orf39Q6P5X5 142 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 LYSMD3Q7Z3D4 306 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 MAVSQ7Z434 540 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 SPRED2Q7Z698 418 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 CCNYL1Q8N7R7 359 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 PPFIBP2Q8ND30 876 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 WDR60Q8WVS4 1066 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 OSBPL1AQ9BXW6 950 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 LINC00597Q9H2U6 94 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 TFB2MQ9H5Q4 396 aaKnown RBP15.24■□□□□ 0.03
SF3B4-201ENST00000271628 PIDD1Q9HB75 910 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 EML4Q9HC35 981 aaKnown RBP15.24■□□□□ 0.03
SF3B4-201ENST00000271628 NMRK1Q9NWW6 199 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 MARK1Q9P0L2 795 aa15.24■□□□□ 0.03
SF3B4-201ENST00000271628 GOLGA8CPA6NN73 597 aa15.23■□□□□ 0.03
SF3B4-201ENST00000271628 A8MT66 165 aa15.23■□□□□ 0.03
SF3B4-201ENST00000271628 TBX10O75333 385 aa15.23■□□□□ 0.03
SF3B4-201ENST00000271628 VPS26AO75436 327 aa15.23■□□□□ 0.03
SF3B4-201ENST00000271628 KRT36O76013 467 aa15.23■□□□□ 0.03
SF3B4-201ENST00000271628 POP4O95707 220 aaKnown RBP15.23■□□□□ 0.03
SF3B4-201ENST00000271628 CHRNGP07510 517 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms