RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 PPM1MQ96MI6 270 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 ADAM2Q99965 735 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 RTP3Q9BQQ7 232 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 ERVK-6Q9BXR3 956 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 SLAMF8Q9P0V8 285 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 TMEM181Q9P2C4 612 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 MAP10Q9P2G4 905 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 WARS2Q9UGM6 360 aaKnown RBP12.61□□□□□ -0.39
LIG1-201ENST00000263274 SLC8A2Q9UPR5 921 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 ARPC2O15144 300 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 GMNNO75496 209 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 CHEK2O96017 543 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 OR1G1P47890 313 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 MLLT6P55198 1093 aaPredicted RBP12.6□□□□□ -0.39
LIG1-201ENST00000263274 MERTKQ12866 999 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 FOXD4Q12950 439 aaPredicted RBP12.6□□□□□ -0.39
LIG1-201ENST00000263274 APOFQ13790 326 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 XKR4Q5GH76 650 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 PIK3R6Q5UE93 754 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 C16orf87Q6PH81 154 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 XKR5Q6UX68 686 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 PTCD2Q8WV60 388 aaKnown RBP12.6□□□□□ -0.39
LIG1-201ENST00000263274 GAB3Q8WWW8 586 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 LRRC58Q96CX6 371 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 ACBD6Q9BR61 282 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 RBM38Q9H0Z9 239 aaKnown RBP12.6□□□□□ -0.39
LIG1-201ENST00000263274 SLC27A5Q9Y2P5 690 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 TCRBV3S1A0A5B6 114 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 GNGT2O14610 69 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 KPNA6O60684 536 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 CYP2C18P33260 490 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 CLCQ05315 142 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 LIPEQ05469 1076 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 GRB14Q14449 540 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 SGO1Q5FBB7 561 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 ANKS6Q68DC2 871 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 FAM45BPQ6NSW5 357 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 TAS2R42Q7RTR8 314 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 SCD5Q86SK9 330 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 FAM45AQ8TCE6 357 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 C12orf43Q96C57 262 aaKnown RBP12.6□□□□□ -0.39
LIG1-201ENST00000263274 CXorf21Q9HAI6 301 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 CMTM6Q9NX76 183 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 EVLQ9UI08 416 aaPredicted RBP12.6□□□□□ -0.39
LIG1-201ENST00000263274 TRIM43BA6NCK2 446 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 CCDC154A6NI56 674 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 CDC7O00311 574 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 SYNCRIPO60506 623 aaKnown RBP12.6□□□□□ -0.39
LIG1-201ENST00000263274 PIM1P11309 404 aaPredicted RBP12.6□□□□□ -0.39
LIG1-201ENST00000263274 ITGB6P18564 788 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 GPX3P22352 226 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 MAP4P27816 1152 aaKnown RBP12.6□□□□□ -0.39
LIG1-201ENST00000263274 POLD2P49005 469 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 UFM1P61960 85 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 UPP1Q16831 310 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 LZICQ8WZA0 190 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 SERPINB11Q96P15 392 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 HGH1Q9BTY7 390 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 ZYG11BQ9C0D3 744 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 CCDC90BQ9GZT6 254 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 CATSPERZQ9NTU4 200 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 GMIPQ9P107 970 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 GALPQ9UBC7 116 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 DOLKQ9UPQ8 538 aa12.6□□□□□ -0.39
LIG1-201ENST00000263274 DOCK3Q8IZD9 2030 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 A0A1W2PPW3 197 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 MYADML2A6NDP7 307 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 NPEPPSL1A6NEC2 478 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 B4GAT1O43505 415 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 GSK3BP49841 420 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 PSMD7P51665 324 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 CCR3P51677 355 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 HTRA3P83110 453 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 TXNL4AP83876 142 aaKnown RBP12.59□□□□□ -0.39
LIG1-201ENST00000263274 PTPRNQ16849 979 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 ZRANB3Q5FWF4 1079 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 KDELC1Q6UW63 502 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 TMEM26Q6ZUK4 368 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 STK32CQ86UX6 486 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 CARM1Q86X55 608 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 OR4L1Q8NH43 312 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 IRGQQ8WZA9 623 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 ERLEC1Q96DZ1 483 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 PARK7Q99497 189 aaKnown RBP12.59□□□□□ -0.39
LIG1-201ENST00000263274 MTG1Q9BT17 334 aaPredicted RBP12.59□□□□□ -0.39
LIG1-201ENST00000263274 C9orf16Q9BUW7 83 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 ALG2Q9H553 416 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 OSER1Q9NX31 292 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 DUS2Q9NX74 493 aaKnown RBP12.59□□□□□ -0.39
LIG1-201ENST00000263274 PKD2L2Q9NZM6 624 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 CD300AQ9UGN4 299 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 POLG2Q9UHN1 485 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 PADI3Q9ULW8 664 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 TRPV2Q9Y5S1 764 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 E5RI56 91 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 SNAP29O95721 258 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 ALBP02768 609 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 GGT5P36269 586 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 GJA8P48165 433 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 PIK3CGP48736 1102 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms