RNA–Protein interactions for RNA: ENST00000230085.12

SNX3-201, Transcript of sorting nexin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX3, Length 1,755 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-201ENST00000230085 PIGZQ86VD9 579 aa20.52■□□□□ 0.88
SNX3-201ENST00000230085 DHFR2Q86XF0 187 aa20.52■□□□□ 0.88
SNX3-201ENST00000230085 C2CD4AQ8NCU7 369 aaPredicted RBP20.52■□□□□ 0.88
SNX3-201ENST00000230085 PKMYT1Q99640 499 aa20.52■□□□□ 0.88
SNX3-201ENST00000230085 HOPXQ9BPY8 73 aaPredicted RBP20.52■□□□□ 0.88
SNX3-201ENST00000230085 TUBA1CQ9BQE3 449 aa20.52■□□□□ 0.88
SNX3-201ENST00000230085 CAAP1Q9H8G2 361 aa20.52■□□□□ 0.88
SNX3-201ENST00000230085 AAR2Q9Y312 384 aaKnown RBP20.52■□□□□ 0.88
SNX3-201ENST00000230085 HCFC2Q9Y5Z7 792 aa20.52■□□□□ 0.88
SNX3-201ENST00000230085 PLXNA3P51805 1871 aa20.52■□□□□ 0.88
SNX3-201ENST00000230085 DLGAP1O14490 977 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 SRP72O76094 671 aaKnown RBP20.51■□□□□ 0.87
SNX3-201ENST00000230085 ABLIM3O94929 683 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 STAMBPO95630 424 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 ZNF12P17014 697 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 NFKB1P19838 968 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 ADORA2BP29275 332 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 SLC26A3P40879 764 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 ATP6V0D1P61421 351 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 PRKCQQ04759 706 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 GPR17Q13304 367 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 OLIG2Q13516 323 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 TECRLQ5HYJ1 363 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 LCN8Q6JVE9 175 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 FAM171BQ6P995 826 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 LILRA6Q6PI73 481 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 B3GALNT2Q8NCR0 500 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 PNPT1Q8TCS8 783 aaKnown RBP20.51■□□□□ 0.87
SNX3-201ENST00000230085 RHBDL2Q9NX52 303 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 FBXW11Q9UKB1 542 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 FAM95CA0A1B0GW59 222 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 M0QYT0 321 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 MRASO14807 208 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 EPCAMP16422 314 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 HMOX2P30519 316 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 TPI1P60174 286 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 FOXM1Q08050 763 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 ADIGQ0VDE8 80 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 GRSF1Q12849 480 aaKnown RBP eCLIP20.51■□□□□ 0.87
SNX3-201ENST00000230085 ZNF829Q3KNS6 432 aaPredicted RBP20.51■□□□□ 0.87
SNX3-201ENST00000230085 KIAA0930Q6ICG6 404 aaPredicted RBP20.51■□□□□ 0.87
SNX3-201ENST00000230085 CNSTQ6PJW8 725 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 SPRED1Q7Z699 444 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 SLC22A9Q8IVM8 553 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 ATAD1Q8NBU5 361 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 FAM156AQ8NDB6 213 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 VN1R2Q8NFZ6 395 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 SLC2A14Q8TDB8 520 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 SLC22A17Q8WUG5 538 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 BORCS5Q969J3 196 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 FEM1CQ96JP0 617 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 OSBPL2Q9H1P3 480 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 TRPC7Q9HCX4 862 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 AGPAT4Q9NRZ5 378 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 PIGVQ9NUD9 493 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 FAF1Q9UNN5 650 aaPredicted RBP20.51■□□□□ 0.87
SNX3-201ENST00000230085 MTF2Q9Y483 593 aaPredicted RBP20.51■□□□□ 0.87
SNX3-201ENST00000230085 SNX13Q9Y5W8 968 aa20.51■□□□□ 0.87
SNX3-201ENST00000230085 LINC01565O15544 149 aa20.5■□□□□ 0.87
SNX3-201ENST00000230085 VNN2O95498 520 aa20.5■□□□□ 0.87
SNX3-201ENST00000230085 GLUD1P00367 558 aa20.5■□□□□ 0.87
SNX3-201ENST00000230085 INHBBP09529 407 aa20.5■□□□□ 0.87
SNX3-201ENST00000230085 MRPL19P49406 292 aaKnown RBP20.5■□□□□ 0.87
SNX3-201ENST00000230085 KCNC3Q14003 757 aa20.5■□□□□ 0.87
SNX3-201ENST00000230085 SLC36A3Q495N2 470 aa20.5■□□□□ 0.87
SNX3-201ENST00000230085 ELMSAN1Q6PJG2 1045 aa20.5■□□□□ 0.87
SNX3-201ENST00000230085 SLC41A1Q8IVJ1 513 aa20.5■□□□□ 0.87
SNX3-201ENST00000230085 DCP1BQ8IZD4 617 aaKnown RBP20.5■□□□□ 0.87
SNX3-201ENST00000230085 MYO1HQ8N1T3 1032 aa20.5■□□□□ 0.87
SNX3-201ENST00000230085 PCDH20Q8N6Y1 951 aaKnown RBP20.5■□□□□ 0.87
SNX3-201ENST00000230085 PCYOX1LQ8NBM8 494 aa20.5■□□□□ 0.87
SNX3-201ENST00000230085 TBRG4Q969Z0 631 aaKnown RBP eCLIP20.5■□□□□ 0.876e-11■■■■□ 23.5
SNX3-201ENST00000230085 NXNL1Q96CM4 212 aa20.5■□□□□ 0.87
SNX3-201ENST00000230085 CDCA3Q99618 268 aaPredicted RBP20.5■□□□□ 0.87
SNX3-201ENST00000230085 C9orf16Q9BUW7 83 aa20.5■□□□□ 0.87
SNX3-201ENST00000230085 PCDHAC1Q9H158 963 aa20.5■□□□□ 0.87
SNX3-201ENST00000230085 IGSF5Q9NSI5 407 aa20.5■□□□□ 0.87
SNX3-201ENST00000230085 G3BP2Q9UN86 482 aaKnown RBP20.5■□□□□ 0.87
SNX3-201ENST00000230085 C5orf42Q9H799 3197 aa20.5■□□□□ 0.87
SNX3-201ENST00000230085 FCGR1AP12314 374 aa20.49■□□□□ 0.87
SNX3-201ENST00000230085 NPR3P17342 541 aa20.49■□□□□ 0.87
SNX3-201ENST00000230085 ABCG1P45844 678 aa20.49■□□□□ 0.87
SNX3-201ENST00000230085 PHEXP78562 749 aa20.49■□□□□ 0.87
SNX3-201ENST00000230085 LARP4Q71RC2 724 aaKnown RBP eCLIP20.49■□□□□ 0.877e-6■□□□□ 9
SNX3-201ENST00000230085 CEP97Q8IW35 865 aa20.49■□□□□ 0.87
SNX3-201ENST00000230085 TP53INP2Q8IXH6 220 aa20.49■□□□□ 0.87
SNX3-201ENST00000230085 MINDY1Q8N5J2 469 aa20.49■□□□□ 0.87
SNX3-201ENST00000230085 NPWQ8N729 165 aa20.49■□□□□ 0.87
SNX3-201ENST00000230085 FAM47BQ8NA70 645 aa20.49■□□□□ 0.87
SNX3-201ENST00000230085 ZBTB8BQ8NAP8 495 aaPredicted RBP20.49■□□□□ 0.87
SNX3-201ENST00000230085 TSPEARQ8WU66 669 aa20.49■□□□□ 0.87
SNX3-201ENST00000230085 PCED1BQ96HM7 432 aa20.49■□□□□ 0.87
SNX3-201ENST00000230085 FCRL5Q96RD9 977 aa20.49■□□□□ 0.87
SNX3-201ENST00000230085 CRISPLD1Q9H336 500 aa20.49■□□□□ 0.87
SNX3-201ENST00000230085 POMKQ9H5K3 350 aa20.49■□□□□ 0.87
SNX3-201ENST00000230085 TREX1Q9NSU2 369 aa20.49■□□□□ 0.87
SNX3-201ENST00000230085 MYLKQ15746 1914 aa20.49■□□□□ 0.87
SNX3-201ENST00000230085 SHROOM3Q8TF72 1996 aa20.49■□□□□ 0.87
SNX3-201ENST00000230085 MTCL1Q9Y4B5 1905 aaKnown RBP20.49■□□□□ 0.87
SNX3-201ENST00000230085 MTMR11A4FU01 709 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms