RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 CHMP1BQ7LBR1 199 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 ZC3HC1Q86WB0 502 aaKnown RBP5.73□□□□□ -1.49
SCN1A-216ENST00000637968 CLRN3Q8NCR9 226 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 OR2T34Q8NGX1 318 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 OR2T3Q8NH03 318 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 ZC3H10Q96K80 434 aaKnown RBP5.73□□□□□ -1.49
SCN1A-216ENST00000637968 TTYH1Q9H313 450 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-216ENST00000637968 ACAD9Q9H845 621 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 ZNF334Q9HCZ1 680 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-216ENST00000637968 DCDC2Q9UHG0 476 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 ZNF222Q9UK12 451 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 COL15A1P39059 1388 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 KDM3AQ9Y4C1 1321 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 MYH4Q9Y623 1939 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 ZNF487B1APH4 448 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 PIK3R2O00459 728 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 FPGTO14772 594 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 ZBTB24O43167 697 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-216ENST00000637968 UGT2B11O75310 529 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 RFPL3O75679 317 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 STAU1O95793 577 aaKnown RBP5.73□□□□□ -1.49
SCN1A-216ENST00000637968 CHRM5P08912 532 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-216ENST00000637968 PTX3P26022 381 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-216ENST00000637968 RPL10P27635 214 aaKnown RBP5.73□□□□□ -1.49
SCN1A-216ENST00000637968 CSKP41240 450 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 PIK3CBP42338 1070 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 ARCN1P48444 511 aaKnown RBP5.73□□□□□ -1.49
SCN1A-216ENST00000637968 DSC1Q08554 894 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 RPA4Q13156 261 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 RAPSNQ13702 412 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 ACOX1Q15067 660 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 PCBP1Q15365 356 aaKnown RBP eCLIP5.73□□□□□ -1.49
SCN1A-216ENST00000637968 AANATQ16613 207 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 ZBTB37Q5TC79 503 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 ARHGAP17Q68EM7 881 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 TMEM81Q6P7N7 255 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 ILDR2Q71H61 639 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 TRMT1LQ7Z2T5 733 aaKnown RBP5.73□□□□□ -1.49
SCN1A-216ENST00000637968 CAMKK1Q8N5S9 505 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 ANKFN1Q8N957 763 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 ZNF527Q8NB42 609 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 OR6S1Q8NH40 331 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 OR52N1Q8NH53 320 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 SETD6Q8TBK2 473 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 TRPM4Q8TD43 1214 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 EXOC2Q96KP1 924 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 RPRD1AQ96P16 312 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-216ENST00000637968 CCDC32Q9BV29 185 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 TRIM62Q9BVG3 475 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 GPR63Q9BZJ6 419 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 SPAG4Q9NPE6 437 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 TBC1D13Q9NVG8 400 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 EIF3KQ9UBQ5 218 aaKnown RBP5.73□□□□□ -1.49
SCN1A-216ENST00000637968 MORF4L1Q9UBU8 362 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 KCNH4Q9UQ05 1017 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 RPH3AQ9Y2J0 694 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-216ENST00000637968 TCAF1Q9Y4C2 921 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 PRR36Q9H6K5 1346 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 SYNJ2BP-COX16A0A087WUM0 186 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 TCRBV7S2A1N4TA0A589 114 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 C9IYK1 514 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 PLOD2O00469 737 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 PRKAB2O43741 272 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 KCNK2O95069 426 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 MBP02144 154 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 APOC3P02656 99 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 CHRNA1P02708 482 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 S100A8P05109 93 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 CD63P08962 238 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 ZDHHC11BP0C7U3 371 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 JUNBP17275 347 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-216ENST00000637968 GJA1P17302 382 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 CRKLP46109 303 aaKnown RBP5.73□□□□□ -1.49
SCN1A-216ENST00000637968 SOX9P48436 509 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 IDH3AP50213 366 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 SCNN1GP51170 649 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 CSTF1Q05048 431 aaKnown RBP5.73□□□□□ -1.49
SCN1A-216ENST00000637968 NOMO2Q5JPE7 1267 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 FAM182BQ5T319 152 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 FAXCQ5TGI0 409 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 BICRALQ6AI39 1079 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 TATDN1Q6P1N9 297 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 HAGHLQ6PII5 290 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-216ENST00000637968 CRTC1Q6UUV9 634 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 C5orf46Q6UWT4 87 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 LRRC55Q6ZSA7 311 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 GLB1L3Q8NCI6 653 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-216ENST00000637968 SETD9Q8NE22 299 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 TFB1MQ8WVM0 346 aaKnown RBP5.73□□□□□ -1.49
SCN1A-216ENST00000637968 AP2M1Q96CW1 435 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 UBE2TQ9NPD8 197 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-216ENST00000637968 PAK1IP1Q9NWT1 392 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-216ENST00000637968 VTI1BQ9UEU0 232 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 SETD1AO15047 1707 aaKnown RBP5.73□□□□□ -1.49
SCN1A-216ENST00000637968 TET3O43151 1660 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 LOC100506127A0A0U1RQW1 187 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 AGAP5A6NIR3 686 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 CST8O60676 142 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 SOAT2O75908 522 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 DDAH1O94760 285 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms