RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 SFRP1Q8N474 314 aa14.46□□□□□ -0.09
CLN3-249ENST00000636685 CISD2Q8N5K1 135 aaKnown RBP14.46□□□□□ -0.09
CLN3-249ENST00000636685 THAP4Q8WY91 577 aa14.46□□□□□ -0.09
CLN3-249ENST00000636685 TBC1D31Q96DN5 1066 aa14.46□□□□□ -0.09
CLN3-249ENST00000636685 NUS1Q96E22 293 aa14.46□□□□□ -0.09
CLN3-249ENST00000636685 COQ10AQ96MF6 247 aa14.46□□□□□ -0.09
CLN3-249ENST00000636685 SCAND2PQ9GZW5 306 aaPredicted RBP14.46□□□□□ -0.09
CLN3-249ENST00000636685 TMEM51Q9NW97 253 aa14.46□□□□□ -0.09
CLN3-249ENST00000636685 SLC17A4Q9Y2C5 497 aa14.46□□□□□ -0.09
CLN3-249ENST00000636685 ZGRF1Q86YA3 2104 aa14.45□□□□□ -0.1
CLN3-249ENST00000636685 FAM237AA0A1B0GTK4 181 aa14.45□□□□□ -0.1
CLN3-249ENST00000636685 ADRA1BP35368 520 aa14.45□□□□□ -0.1
CLN3-249ENST00000636685 RGRP47804 291 aa14.45□□□□□ -0.1
CLN3-249ENST00000636685 GFERP55789 205 aa14.45□□□□□ -0.1
CLN3-249ENST00000636685 ATP11AP98196 1134 aa14.45□□□□□ -0.1
CLN3-249ENST00000636685 HHEXQ03014 270 aa14.45□□□□□ -0.1
CLN3-249ENST00000636685 PTK2Q05397 1052 aa14.45□□□□□ -0.1
CLN3-249ENST00000636685 PNOCQ13519 176 aa14.45□□□□□ -0.1
CLN3-249ENST00000636685 COBLL1Q53SF7 1204 aa14.45□□□□□ -0.1
CLN3-249ENST00000636685 ZNF658Q5TYW1 1059 aaPredicted RBP14.45□□□□□ -0.1
CLN3-249ENST00000636685 CEP63Q96MT8 703 aa14.45□□□□□ -0.1
CLN3-249ENST00000636685 OR2M4Q96R27 311 aa14.45□□□□□ -0.1
CLN3-249ENST00000636685 OR6C1Q96RD1 312 aa14.45□□□□□ -0.1
CLN3-249ENST00000636685 RETREG1Q9H6L5 497 aa14.45□□□□□ -0.1
CLN3-249ENST00000636685 LHX9Q9NQ69 397 aa14.45□□□□□ -0.1
CLN3-249ENST00000636685 PHTF1Q9UMS5 762 aa14.45□□□□□ -0.1
CLN3-249ENST00000636685 PCDHGB7Q9Y5F8 929 aa14.45□□□□□ -0.1
CLN3-249ENST00000636685 GOLGA6CA6NDK9 693 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 GOLGA6BA6NDN3 693 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 C21orf140B9A014 251 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 GOLGA8SH3BPF8 625 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 SPAG6O75602 509 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 CEACAM4O75871 244 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 ANKRD34CP0C6C1 535 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 GOLGA6DP0CG33 693 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 KRT9P35527 623 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 SEPHS1P49903 392 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 NDST2P52849 883 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 ITGA1P56199 1179 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 APBA1Q02410 837 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 CDK18Q07002 472 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 IL10RAQ13651 578 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 ELOAQ14241 798 aaKnown RBP14.44□□□□□ -0.1
CLN3-249ENST00000636685 C2CD6Q53TS8 623 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 DENND2CQ68D51 928 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 ENOSF1Q7L5Y1 443 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 PAF1Q8N7H5 531 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 FDCSPQ8NFU4 85 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 FNIP1Q8TF40 1166 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 LURAP1Q96LR2 239 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 TUBGCP5Q96RT8 1024 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 NUDT9Q9BW91 350 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 TBC1D10AQ9BXI6 508 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 GOLPH3LQ9H4A5 285 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 ATP13A3Q9H7F0 1226 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 AKIRIN1Q9H9L7 192 aaPredicted RBP14.44□□□□□ -0.1
CLN3-249ENST00000636685 SARS2Q9NP81 518 aaKnown RBP14.44□□□□□ -0.1
CLN3-249ENST00000636685 GOLGA6AQ9NYA3 693 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 UBA2Q9UBT2 640 aaPredicted RBP14.44□□□□□ -0.1
CLN3-249ENST00000636685 B4GALT6Q9UBX8 382 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 TMEM98Q9Y2Y6 226 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 SPG11Q96JI7 2443 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 TACC2O95359 2948 aa14.44□□□□□ -0.1
CLN3-249ENST00000636685 MN1Q10571 1320 aaPredicted RBP14.43□□□□□ -0.1
CLN3-249ENST00000636685 RASA4BC9J798 803 aa14.43□□□□□ -0.1
CLN3-249ENST00000636685 PRSS44E7EML9 344 aa14.43□□□□□ -0.1
CLN3-249ENST00000636685 RASA4O43374 803 aa14.43□□□□□ -0.1
CLN3-249ENST00000636685 DIAPH2O60879 1101 aa14.43□□□□□ -0.1
CLN3-249ENST00000636685 PLEKP08567 350 aaPredicted RBP14.43□□□□□ -0.1
CLN3-249ENST00000636685 SERPINA4P29622 427 aa14.43□□□□□ -0.1
CLN3-249ENST00000636685 SCNN1AP37088 669 aa14.43□□□□□ -0.1
CLN3-249ENST00000636685 PTGIRP43119 386 aa14.43□□□□□ -0.1
CLN3-249ENST00000636685 GABRB2P47870 512 aa14.43□□□□□ -0.1
CLN3-249ENST00000636685 CNGA3Q16281 694 aa14.43□□□□□ -0.1
CLN3-249ENST00000636685 CDO1Q16878 200 aa14.43□□□□□ -0.1
CLN3-249ENST00000636685 PLEKHN1Q494U1 663 aaPredicted RBP14.43□□□□□ -0.1
CLN3-249ENST00000636685 RAET1GQ6H3X3 334 aa14.43□□□□□ -0.1
CLN3-249ENST00000636685 FAM199XQ6PEV8 388 aaPredicted RBP14.43□□□□□ -0.1
CLN3-249ENST00000636685 MARK2Q7KZI7 788 aaKnown RBP14.43□□□□□ -0.1
CLN3-249ENST00000636685 SRLQ86TD4 932 aa14.43□□□□□ -0.1
CLN3-249ENST00000636685 RHOT1Q8IXI2 618 aa14.43□□□□□ -0.1
CLN3-249ENST00000636685 ECHDC3Q96DC8 303 aa14.43□□□□□ -0.1
CLN3-249ENST00000636685 C18orf8Q96DM3 657 aa14.43□□□□□ -0.1
CLN3-249ENST00000636685 SCARF2Q96GP6 870 aaPredicted RBP14.43□□□□□ -0.1
CLN3-249ENST00000636685 C9orf72Q96LT7 481 aa14.43□□□□□ -0.1
CLN3-249ENST00000636685 BRD8Q9H0E9 1235 aa14.43□□□□□ -0.1
CLN3-249ENST00000636685 TMEM59LQ9UK28 342 aa14.43□□□□□ -0.1
CLN3-249ENST00000636685 PIKFYVEQ9Y2I7 2098 aa14.42□□□□□ -0.1
CLN3-249ENST00000636685 GOLGA6L3A6NEY3 463 aa14.42□□□□□ -0.1
CLN3-249ENST00000636685 A6NL46 340 aa14.42□□□□□ -0.1
CLN3-249ENST00000636685 ZNF202O95125 648 aa14.42□□□□□ -0.1
CLN3-249ENST00000636685 TIAF1O95411 115 aa14.42□□□□□ -0.1
CLN3-249ENST00000636685 HNRNPH3P31942 346 aaKnown RBP14.42□□□□□ -0.1
CLN3-249ENST00000636685 ETV3P41162 512 aa14.42□□□□□ -0.1
CLN3-249ENST00000636685 EPHA4P54764 986 aa14.42□□□□□ -0.1
CLN3-249ENST00000636685 IL11RAQ14626 422 aa14.42□□□□□ -0.1
CLN3-249ENST00000636685 ZRSR2Q15696 482 aaKnown RBP14.42□□□□□ -0.1
CLN3-249ENST00000636685 C15orf59Q2T9L4 293 aaPredicted RBP14.42□□□□□ -0.1
CLN3-249ENST00000636685 PYCR3Q53H96 274 aa14.42□□□□□ -0.1
CLN3-249ENST00000636685 PLXDC1Q8IUK5 500 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms