RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 RAD18Q9NS91 495 aa20.24■□□□□ 0.83
PTCD3-220ENST00000627371 TM7SF3Q9NS93 570 aa20.24■□□□□ 0.83
PTCD3-220ENST00000627371 CACNB4O00305 520 aaPredicted RBP20.23■□□□□ 0.83
PTCD3-220ENST00000627371 SLC30A4O14863 429 aa20.23■□□□□ 0.83
PTCD3-220ENST00000627371 SOD1P00441 154 aa20.23■□□□□ 0.83
PTCD3-220ENST00000627371 KRT14P02533 472 aa20.23■□□□□ 0.83
PTCD3-220ENST00000627371 HOXC4P09017 264 aaPredicted RBP20.23■□□□□ 0.83
PTCD3-220ENST00000627371 SDHBP21912 280 aa20.23■□□□□ 0.83
PTCD3-220ENST00000627371 PAFAH1B1P43034 410 aa20.23■□□□□ 0.83
PTCD3-220ENST00000627371 LMAN1P49257 510 aa20.23■□□□□ 0.83
PTCD3-220ENST00000627371 SLC14A1Q13336 389 aa20.23■□□□□ 0.83
PTCD3-220ENST00000627371 MSLNQ13421 630 aaPredicted RBP20.23■□□□□ 0.83
PTCD3-220ENST00000627371 SHBQ15464 509 aa20.23■□□□□ 0.83
PTCD3-220ENST00000627371 UAP1L1Q3KQV9 507 aa20.23■□□□□ 0.83
PTCD3-220ENST00000627371 PRAMEF14Q5SWL7 426 aa20.23■□□□□ 0.83
PTCD3-220ENST00000627371 HENMT1Q5T8I9 393 aaKnown RBP20.23■□□□□ 0.83
PTCD3-220ENST00000627371 HEATR4Q86WZ0 1026 aa20.23■□□□□ 0.83
PTCD3-220ENST00000627371 RIOK2Q9BVS4 552 aaKnown RBP20.23■□□□□ 0.83
PTCD3-220ENST00000627371 TEX101Q9BY14 249 aa20.23■□□□□ 0.83
PTCD3-220ENST00000627371 CDH19Q9H159 772 aa20.23■□□□□ 0.83
PTCD3-220ENST00000627371 FAM83DQ9H4H8 585 aa20.23■□□□□ 0.83
PTCD3-220ENST00000627371 EIF2B3Q9NR50 452 aaKnown RBP20.23■□□□□ 0.83
PTCD3-220ENST00000627371 PCDHGB2Q9Y5G2 931 aa20.23■□□□□ 0.83
PTCD3-220ENST00000627371 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP20.22■□□□□ 0.83
PTCD3-220ENST00000627371 PDE2AO00408 941 aaPredicted RBP20.22■□□□□ 0.83
PTCD3-220ENST00000627371 PCDHGA12O60330 932 aa20.22■□□□□ 0.83
PTCD3-220ENST00000627371 APRTP07741 180 aa20.22■□□□□ 0.83
PTCD3-220ENST00000627371 HTR1BP28222 390 aa20.22■□□□□ 0.83
PTCD3-220ENST00000627371 GPR1P46091 355 aa20.22■□□□□ 0.83
PTCD3-220ENST00000627371 BASP1P80723 227 aaKnown RBP20.22■□□□□ 0.83
PTCD3-220ENST00000627371 TAF1AQ15573 450 aaPredicted RBP20.22■□□□□ 0.83
PTCD3-220ENST00000627371 RSPO4Q2I0M5 234 aaPredicted RBP20.22■□□□□ 0.83
PTCD3-220ENST00000627371 ADAMTSL4Q6UY14 1074 aa20.22■□□□□ 0.83
PTCD3-220ENST00000627371 GPR26Q8NDV2 337 aa20.22■□□□□ 0.83
PTCD3-220ENST00000627371 BRSK1Q8TDC3 778 aa20.22■□□□□ 0.83
PTCD3-220ENST00000627371 DDX47Q9H0S4 455 aaKnown RBP20.22■□□□□ 0.83
PTCD3-220ENST00000627371 PHPT1Q9NRX4 125 aaPredicted RBP20.22■□□□□ 0.83
PTCD3-220ENST00000627371 IL17CQ9P0M4 197 aa20.22■□□□□ 0.83
PTCD3-220ENST00000627371 NEU2Q9Y3R4 380 aa20.22■□□□□ 0.83
PTCD3-220ENST00000627371 PLXNB3Q9ULL4 1909 aa20.21■□□□□ 0.83
PTCD3-220ENST00000627371 ARID1BQ8NFD5 2236 aaPredicted RBP20.21■□□□□ 0.83
PTCD3-220ENST00000627371 ECEL1O95672 775 aa20.21■□□□□ 0.83
PTCD3-220ENST00000627371 GAS8O95995 478 aa20.21■□□□□ 0.83
PTCD3-220ENST00000627371 MYCLP1P12525 358 aaPredicted RBP20.21■□□□□ 0.83
PTCD3-220ENST00000627371 NME1P15531 152 aaKnown RBP20.21■□□□□ 0.83
PTCD3-220ENST00000627371 BPIP17213 487 aa20.21■□□□□ 0.83
PTCD3-220ENST00000627371 EPHA8P29322 1005 aaPredicted RBP20.21■□□□□ 0.83
PTCD3-220ENST00000627371 CDK3Q00526 305 aa20.21■□□□□ 0.83
PTCD3-220ENST00000627371 IL9RQ01113 521 aa20.21■□□□□ 0.83
PTCD3-220ENST00000627371 EIF2B5Q13144 721 aaKnown RBP20.21■□□□□ 0.83
PTCD3-220ENST00000627371 TRIP13Q15645 432 aaPredicted RBP20.21■□□□□ 0.83
PTCD3-220ENST00000627371 KCTD19Q17RG1 926 aaPredicted RBP20.21■□□□□ 0.83
PTCD3-220ENST00000627371 SLCO2A1Q92959 643 aa20.21■□□□□ 0.83
PTCD3-220ENST00000627371 WDR92Q96MX6 357 aa20.21■□□□□ 0.83
PTCD3-220ENST00000627371 PLEKHG4BQ96PX9 1271 aa20.21■□□□□ 0.83
PTCD3-220ENST00000627371 AGAP2Q99490 1192 aa20.21■□□□□ 0.83
PTCD3-220ENST00000627371 LGR4Q9BXB1 951 aa20.21■□□□□ 0.83
PTCD3-220ENST00000627371 DNAJC28Q9NX36 388 aa20.21■□□□□ 0.83
PTCD3-220ENST00000627371 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP20.21■□□□□ 0.83
PTCD3-220ENST00000627371 PCYOX1Q9UHG3 505 aa20.21■□□□□ 0.83
PTCD3-220ENST00000627371 ARL5AQ9Y689 179 aa20.21■□□□□ 0.83
PTCD3-220ENST00000627371 DCHS1Q96JQ0 3298 aa20.21■□□□□ 0.83
PTCD3-220ENST00000627371 C2orf81A6NN90 581 aa20.2■□□□□ 0.82
PTCD3-220ENST00000627371 CCDC188H7C350 402 aa20.2■□□□□ 0.82
PTCD3-220ENST00000627371 PPFIA2O75334 1257 aa20.2■□□□□ 0.82
PTCD3-220ENST00000627371 CRTAMO95727 393 aa20.2■□□□□ 0.82
PTCD3-220ENST00000627371 CSF2P04141 144 aa20.2■□□□□ 0.82
PTCD3-220ENST00000627371 CD59P13987 128 aa20.2■□□□□ 0.82
PTCD3-220ENST00000627371 KELP23276 732 aa20.2■□□□□ 0.82
PTCD3-220ENST00000627371 VPS41P49754 854 aa20.2■□□□□ 0.82
PTCD3-220ENST00000627371 CDH17Q12864 832 aa20.2■□□□□ 0.82
PTCD3-220ENST00000627371 GPS1Q13098 491 aa20.2■□□□□ 0.82
PTCD3-220ENST00000627371 ZDHHC20Q5W0Z9 365 aa20.2■□□□□ 0.82
PTCD3-220ENST00000627371 ALS2CLQ60I27 953 aa20.2■□□□□ 0.82
PTCD3-220ENST00000627371 ENPP7Q6UWV6 458 aa20.2■□□□□ 0.82
PTCD3-220ENST00000627371 PPP1R21Q6ZMI0 780 aa20.2■□□□□ 0.82
PTCD3-220ENST00000627371 OR52K1Q8NGK4 314 aa20.2■□□□□ 0.82
PTCD3-220ENST00000627371 RUNDC3BQ96NL0 473 aa20.2■□□□□ 0.82
PTCD3-220ENST00000627371 ZSCAN5AQ9BUG6 496 aa20.2■□□□□ 0.82
PTCD3-220ENST00000627371 BPIFA1Q9NP55 256 aa20.2■□□□□ 0.82
PTCD3-220ENST00000627371 PNMA8BQ9ULN7 279 aaPredicted RBP20.2■□□□□ 0.82
PTCD3-220ENST00000627371 PKP3Q9Y446 797 aa20.2■□□□□ 0.82
PTCD3-220ENST00000627371 SPTBN4Q9H254 2564 aa20.2■□□□□ 0.82
PTCD3-220ENST00000627371 PCNX2A6NKB5 2137 aa20.19■□□□□ 0.82
PTCD3-220ENST00000627371 FADS2P1A8MWK0 482 aa20.19■□□□□ 0.82
PTCD3-220ENST00000627371 H3BM21 787 aa20.19■□□□□ 0.82
PTCD3-220ENST00000627371 TM4SF5O14894 197 aa20.19■□□□□ 0.82
PTCD3-220ENST00000627371 TUBB4AP04350 444 aa20.19■□□□□ 0.82
PTCD3-220ENST00000627371 TPSB2P20231 275 aa20.19■□□□□ 0.82
PTCD3-220ENST00000627371 LPOP22079 712 aaPredicted RBP20.19■□□□□ 0.82
PTCD3-220ENST00000627371 HNRNPKP61978 463 aaKnown RBP eCLIP20.19■□□□□ 0.82
PTCD3-220ENST00000627371 PDE1BQ01064 536 aa20.19■□□□□ 0.82
PTCD3-220ENST00000627371 SUZ12Q15022 739 aaKnown RBP20.19■□□□□ 0.82
PTCD3-220ENST00000627371 TPSAB1Q15661 275 aa20.19■□□□□ 0.82
PTCD3-220ENST00000627371 ZNF542PQ5EBM4 170 aa20.19■□□□□ 0.82
PTCD3-220ENST00000627371 PDPK2PQ6A1A2 396 aa20.19■□□□□ 0.82
PTCD3-220ENST00000627371 DBX2Q6ZNG2 339 aa20.19■□□□□ 0.82
PTCD3-220ENST00000627371 TRAM1L1Q8N609 369 aa20.19■□□□□ 0.82
PTCD3-220ENST00000627371 DNAAF3Q8N9W5 541 aa20.19■□□□□ 0.82
PTCD3-220ENST00000627371 OR56A4Q8NGH8 313 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms