RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 USB1Q9BQ65 265 aaKnown RBP7.91□□□□□ -1.14
VPS11-209ENST00000622309 BCL7BQ9BQE9 202 aa7.91□□□□□ -1.14
VPS11-209ENST00000622309 ZC3H12CQ9C0D7 883 aaKnown RBP7.91□□□□□ -1.14
VPS11-209ENST00000622309 C6orf62Q9GZU0 229 aaPredicted RBP7.91□□□□□ -1.14
VPS11-209ENST00000622309 SLC35C2Q9NQQ7 365 aa7.91□□□□□ -1.14
VPS11-209ENST00000622309 CCM2LQ9NUG4 571 aaPredicted RBP7.91□□□□□ -1.14
VPS11-209ENST00000622309 FAM105AQ9NUU6 356 aa7.91□□□□□ -1.14
VPS11-209ENST00000622309 CUEDC1Q9NWM3 386 aaPredicted RBP7.91□□□□□ -1.14
VPS11-209ENST00000622309 TAS2R9Q9NYW1 312 aa7.91□□□□□ -1.14
VPS11-209ENST00000622309 PCDHGA10Q9Y5H3 936 aa7.91□□□□□ -1.14
VPS11-209ENST00000622309 PNMA6FA0A0J9YX94 578 aa7.91□□□□□ -1.14
VPS11-209ENST00000622309 TCAF2A6NFQ2 919 aa7.91□□□□□ -1.14
VPS11-209ENST00000622309 POLRMTO00411 1230 aaKnown RBP7.91□□□□□ -1.14
VPS11-209ENST00000622309 CST8O60676 142 aa7.91□□□□□ -1.14
VPS11-209ENST00000622309 GABARAPO95166 117 aa7.91□□□□□ -1.14
VPS11-209ENST00000622309 UNGP13051 313 aaPredicted RBP7.91□□□□□ -1.14
VPS11-209ENST00000622309 TAF2Q6P1X5 1199 aa7.91□□□□□ -1.14
VPS11-209ENST00000622309 LDHDQ86WU2 507 aa7.91□□□□□ -1.14
VPS11-209ENST00000622309 VANGL1Q8TAA9 524 aaPredicted RBP7.91□□□□□ -1.14
VPS11-209ENST00000622309 DDX1Q92499 740 aaKnown RBP7.91□□□□□ -1.14
VPS11-209ENST00000622309 NXPE3Q969Y0 559 aa7.91□□□□□ -1.14
VPS11-209ENST00000622309 CMTM3Q96MX0 182 aa7.91□□□□□ -1.14
VPS11-209ENST00000622309 TWNKQ96RR1 684 aa7.91□□□□□ -1.14
VPS11-209ENST00000622309 ZNF577Q9BSK1 485 aa7.91□□□□□ -1.14
VPS11-209ENST00000622309 UCK2Q9BZX2 261 aa7.91□□□□□ -1.14
VPS11-209ENST00000622309 ANKHQ9HCJ1 492 aa7.91□□□□□ -1.14
VPS11-209ENST00000622309 TRMT6Q9UJA5 497 aaKnown RBP7.91□□□□□ -1.14
VPS11-209ENST00000622309 FBXO5Q9UKT4 447 aa7.91□□□□□ -1.14
VPS11-209ENST00000622309 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP7.91□□□□□ -1.14
VPS11-209ENST00000622309 LAMB1P07942 1786 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 KPNA7A9QM74 516 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 PTGES3LE9PB15 166 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 STK25O00506 426 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 NFIBO00712 420 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 TPP1O14773 563 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 POU3F3P20264 500 aaPredicted RBP7.9□□□□□ -1.14
VPS11-209ENST00000622309 CRHBPP24387 322 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 CD86P42081 329 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 TFAMQ00059 246 aaKnown RBP7.9□□□□□ -1.14
VPS11-209ENST00000622309 GHRHRQ02643 423 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 PIGFQ07326 219 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 MAMLD1Q13495 774 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 SQLEQ14534 574 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 SEMA3AQ14563 771 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 PLA2G4EQ3MJ16 856 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 PMF1Q6P1K2 205 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 TIFABQ6ZNK6 161 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 GK5Q6ZS86 529 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 THAP5Q7Z6K1 395 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 P2RY8Q86VZ1 359 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 RAB43Q86YS6 212 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 EID3Q8N140 333 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 FEZF2Q8TBJ5 459 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 TAS1R2Q8TE23 839 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 RORBQ92753 470 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 MSANTD3Q96H12 275 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 B3GALT6Q96L58 329 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 NUAK2Q9H093 628 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 GHITMQ9H3K2 345 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 ENTPD7Q9NQZ7 604 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 AGPAT4Q9NRZ5 378 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 ZFP57Q9NU63 452 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 STOML2Q9UJZ1 356 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 FBXO10Q9UK96 956 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 GMEB2Q9UKD1 530 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 TLK1Q9UKI8 766 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 PNMA8BQ9ULN7 279 aaPredicted RBP7.9□□□□□ -1.14
VPS11-209ENST00000622309 H0YAE9 185 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 PDHXO00330 501 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 EXTL3O43909 919 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 SRP72O76094 671 aaKnown RBP7.9□□□□□ -1.14
VPS11-209ENST00000622309 CHRNA1P02708 482 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 FCGR1AP12314 374 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 TCF4P15884 667 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 ARCN1P48444 511 aaKnown RBP7.9□□□□□ -1.14
VPS11-209ENST00000622309 NDST1P52848 882 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 POLR2GP62487 172 aaKnown RBP eCLIP7.9□□□□□ -1.14
VPS11-209ENST00000622309 YWHAZP63104 245 aaKnown RBP7.9□□□□□ -1.14
VPS11-209ENST00000622309 TRAF3Q13114 568 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 CA9Q16790 459 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 IRAK1BP1Q5VVH5 260 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 ARHGAP11AQ6P4F7 1023 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 USP17L6PQ6QN14 398 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 ZNF517Q6ZMY9 492 aaPredicted RBP7.9□□□□□ -1.14
VPS11-209ENST00000622309 SPRED1Q7Z699 444 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 PIGZQ86VD9 579 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 C8orf59Q8N0T1 100 aaPredicted RBP7.9□□□□□ -1.14
VPS11-209ENST00000622309 FAM110BQ8TC76 370 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 DYNC2LI1Q8TCX1 351 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 DEDD2Q8WXF8 326 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 HDAC10Q969S8 669 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 SLC45A3Q96JT2 553 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 NGRNQ9NPE2 291 aaKnown RBP7.9□□□□□ -1.14
VPS11-209ENST00000622309 BRD7Q9NPI1 651 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 GPRC5CQ9NQ84 441 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 STARD7Q9NQZ5 370 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 RAB6BQ9NRW1 208 aa7.9□□□□□ -1.14
VPS11-209ENST00000622309 POLR3BQ9NW08 1133 aaPredicted RBP7.9□□□□□ -1.14
VPS11-209ENST00000622309 CCDC59Q9P031 241 aaKnown RBP7.9□□□□□ -1.14
VPS11-209ENST00000622309 TRPS1Q9UHF7 1281 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms