RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 VASH2Q86V25 355 aa17.76■□□□□ 0.43
SHKBP1-227ENST00000602011 ZFAND4Q86XD8 727 aa17.76■□□□□ 0.43
SHKBP1-227ENST00000602011 TEX26Q8N6G2 289 aa17.76■□□□□ 0.43
SHKBP1-227ENST00000602011 FATE1Q969F0 183 aa17.76■□□□□ 0.43
SHKBP1-227ENST00000602011 NSMCE3Q96MG7 304 aa17.76■□□□□ 0.43
SHKBP1-227ENST00000602011 DDA1Q9BW61 102 aa17.76■□□□□ 0.43
SHKBP1-227ENST00000602011 ADNPQ9H2P0 1102 aa17.76■□□□□ 0.43
SHKBP1-227ENST00000602011 RDH14Q9HBH5 336 aa17.76■□□□□ 0.43
SHKBP1-227ENST00000602011 LRRK1Q38SD2 2015 aa17.76■□□□□ 0.43
SHKBP1-227ENST00000602011 PTPN13Q12923 2485 aa17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 COL12A1Q99715 3063 aa17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 IGHV5-10-1A0A0J9YXX1 117 aa17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 B4E171 279 aa17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 DDX3XO00571 662 aaKnown RBP eCLIP17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 FUCA1P04066 466 aa17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 FAM87AP0C7U9 286 aa17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 MAN1A1P33908 653 aa17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 TSPAN7P41732 249 aa17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 FASLGP48023 281 aa17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 MAZP56270 477 aaKnown RBP17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 RPL26P61254 145 aaKnown RBP17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 TRAF2Q12933 501 aa17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 FIGNQ5HY92 759 aa17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 DENND2CQ68D51 928 aa17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 TIGD7Q6NT04 549 aaPredicted RBP17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 TMEM71Q6P5X7 295 aa17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 ZNF574Q6ZN55 896 aaPredicted RBP17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 TMPRSS9Q7Z410 1059 aa17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 NAGSQ8N159 534 aa17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 PELI3Q8N2H9 469 aa17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 AOPEPQ8N6M6 819 aa17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 NIPA2Q8N8Q9 360 aa17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 EXD1Q8NHP7 514 aa17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 PIH1D2Q8WWB5 315 aa17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 SH3KBP1Q96B97 665 aa17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 AP2M1Q96CW1 435 aa17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 TEFMQ96QE5 360 aaKnown RBP17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 OR2M4Q96R27 311 aa17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 POLR1EQ9GZS1 481 aaKnown RBP17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 GEMIN8Q9NWZ8 242 aaKnown RBP17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 FOXJ2Q9P0K8 574 aa17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 PDP2Q9P2J9 529 aa17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 IL17BQ9UHF5 180 aa17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 IP6K2Q9UHH9 426 aa17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 RPL26L1Q9UNX3 145 aaKnown RBP17.75■□□□□ 0.43
SHKBP1-227ENST00000602011 TLN1Q9Y490 2541 aaKnown RBP17.74■□□□□ 0.43
SHKBP1-227ENST00000602011 GOLGA6CA6NDK9 693 aa17.74■□□□□ 0.43
SHKBP1-227ENST00000602011 GOLGA6BA6NDN3 693 aa17.74■□□□□ 0.43
SHKBP1-227ENST00000602011 NPIPB15A6NHN6 443 aaPredicted RBP17.74■□□□□ 0.43
SHKBP1-227ENST00000602011 FZD6O60353 706 aa17.74■□□□□ 0.43
SHKBP1-227ENST00000602011 GOLGA6DP0CG33 693 aa17.74■□□□□ 0.43
SHKBP1-227ENST00000602011 RARAP10276 462 aa17.74■□□□□ 0.43
SHKBP1-227ENST00000602011 WT1P19544 449 aaPredicted RBP17.74■□□□□ 0.43
SHKBP1-227ENST00000602011 LHCGRP22888 699 aa17.74■□□□□ 0.43
SHKBP1-227ENST00000602011 IL1R2P27930 398 aa17.74■□□□□ 0.43
SHKBP1-227ENST00000602011 CYP4F2P78329 520 aa17.74■□□□□ 0.43
SHKBP1-227ENST00000602011 TYRO3Q06418 890 aa17.74■□□□□ 0.43
SHKBP1-227ENST00000602011 TBR1Q16650 682 aa17.74■□□□□ 0.43
SHKBP1-227ENST00000602011 CCDC122Q5T0U0 273 aa17.74■□□□□ 0.43
SHKBP1-227ENST00000602011 SLC30A9Q6PML9 568 aa17.74■□□□□ 0.43
SHKBP1-227ENST00000602011 PGBD5Q8N414 524 aa17.74■□□□□ 0.43
SHKBP1-227ENST00000602011 AVL9Q8NBF6 648 aa17.74■□□□□ 0.43
SHKBP1-227ENST00000602011 HSPH1Q92598 858 aa17.74■□□□□ 0.43
SHKBP1-227ENST00000602011 SYN2Q92777 582 aaPredicted RBP17.74■□□□□ 0.43
SHKBP1-227ENST00000602011 CATSPER2Q96P56 530 aa17.74■□□□□ 0.43
SHKBP1-227ENST00000602011 ZPBPQ9BS86 351 aa17.74■□□□□ 0.43
SHKBP1-227ENST00000602011 EFHD1Q9BUP0 239 aa17.74■□□□□ 0.43
SHKBP1-227ENST00000602011 TRIM7Q9C029 511 aa17.74■□□□□ 0.43
SHKBP1-227ENST00000602011 STN1Q9H668 368 aaKnown RBP17.74■□□□□ 0.43
SHKBP1-227ENST00000602011 GOLGA6AQ9NYA3 693 aa17.74■□□□□ 0.43
SHKBP1-227ENST00000602011 KCNK4Q9NYG8 393 aa17.74■□□□□ 0.43
SHKBP1-227ENST00000602011 MYO1AQ9UBC5 1043 aa17.74■□□□□ 0.43
SHKBP1-227ENST00000602011 ARHGEF17Q96PE2 2063 aaPredicted RBP17.74■□□□□ 0.43
SHKBP1-227ENST00000602011 LRP4O75096 1905 aa17.74■□□□□ 0.43
SHKBP1-227ENST00000602011 SCN8AQ9UQD0 1980 aa17.73■□□□□ 0.43
SHKBP1-227ENST00000602011 IGHV1OR21-1A0A087WYE8 117 aa17.73■□□□□ 0.43
SHKBP1-227ENST00000602011 RGSL1A5PLK6 1076 aa17.73■□□□□ 0.43
SHKBP1-227ENST00000602011 PPFIA2O75334 1257 aa17.73■□□□□ 0.43
SHKBP1-227ENST00000602011 FGF3P11487 239 aaPredicted RBP17.73■□□□□ 0.43
SHKBP1-227ENST00000602011 CCL4P13236 92 aa17.73■□□□□ 0.43
SHKBP1-227ENST00000602011 SLC2A4P14672 509 aa17.73■□□□□ 0.43
SHKBP1-227ENST00000602011 ITGB6P18564 788 aa17.73■□□□□ 0.43
SHKBP1-227ENST00000602011 AK4P27144 223 aaPredicted RBP17.73■□□□□ 0.43
SHKBP1-227ENST00000602011 ANP32AP39687 249 aaKnown RBP17.73■□□□□ 0.43
SHKBP1-227ENST00000602011 ACTR1BP42025 376 aa17.73■□□□□ 0.43
SHKBP1-227ENST00000602011 EPHB1P54762 984 aa17.73■□□□□ 0.43
SHKBP1-227ENST00000602011 ACTR1AP61163 376 aa17.73■□□□□ 0.43
SHKBP1-227ENST00000602011 HADHQ16836 314 aaKnown RBP17.73■□□□□ 0.43
SHKBP1-227ENST00000602011 PYCR3Q53H96 274 aa17.73■□□□□ 0.43
SHKBP1-227ENST00000602011 DCAF12Q5T6F0 453 aa17.73■□□□□ 0.43
SHKBP1-227ENST00000602011 TP53INP2Q8IXH6 220 aa17.73■□□□□ 0.43
SHKBP1-227ENST00000602011 OR10G6Q8NH81 332 aa17.73■□□□□ 0.43
SHKBP1-227ENST00000602011 NKD1Q969G9 470 aa17.73■□□□□ 0.43
SHKBP1-227ENST00000602011 IQCDQ96DY2 449 aa17.73■□□□□ 0.43
SHKBP1-227ENST00000602011 AHCYL2Q96HN2 611 aaKnown RBP17.73■□□□□ 0.43
SHKBP1-227ENST00000602011 CCDC74BQ96LY2 380 aa17.73■□□□□ 0.43
SHKBP1-227ENST00000602011 NUDT22Q9BRQ3 303 aa17.73■□□□□ 0.43
SHKBP1-227ENST00000602011 SLC25A18Q9H1K4 315 aa17.73■□□□□ 0.43
SHKBP1-227ENST00000602011 ABCG8Q9H221 673 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms