RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 SHOC2Q9UQ13 582 aa16.8■□□□□ 0.28
TRIM28-215ENST00000601150 AAR2Q9Y312 384 aaKnown RBP16.8■□□□□ 0.28
TRIM28-215ENST00000601150 TNFP01375 233 aa16.79■□□□□ 0.28
TRIM28-215ENST00000601150 CTSEP14091 401 aa16.79■□□□□ 0.28
TRIM28-215ENST00000601150 HLA-DPA1P20036 260 aa16.79■□□□□ 0.28
TRIM28-215ENST00000601150 PSMB4P28070 264 aa16.79■□□□□ 0.28
TRIM28-215ENST00000601150 CHRNA4P43681 627 aa16.79■□□□□ 0.28
TRIM28-215ENST00000601150 CDK3Q00526 305 aa16.79■□□□□ 0.28
TRIM28-215ENST00000601150 SLC1A5Q15758 541 aa16.79■□□□□ 0.28
TRIM28-215ENST00000601150 PROX2Q3B8N5 592 aa16.79■□□□□ 0.28
TRIM28-215ENST00000601150 TMC3Q7Z5M5 1100 aa16.79■□□□□ 0.28
TRIM28-215ENST00000601150 SLCO6A1Q86UG4 719 aa16.79■□□□□ 0.28
TRIM28-215ENST00000601150 REXO1L1PQ8IX06 675 aa16.79■□□□□ 0.28
TRIM28-215ENST00000601150 FSTL5Q8N475 847 aaPredicted RBP16.79■□□□□ 0.28
TRIM28-215ENST00000601150 SLC25A41Q8N5S1 370 aa16.79■□□□□ 0.28
TRIM28-215ENST00000601150 PNPLA1Q8N8W4 532 aa16.79■□□□□ 0.28
TRIM28-215ENST00000601150 ATG4AQ8WYN0 398 aa16.79■□□□□ 0.28
TRIM28-215ENST00000601150 OR1E3Q8WZA6 343 aa16.79■□□□□ 0.28
TRIM28-215ENST00000601150 PDXPQ96GD0 296 aa16.79■□□□□ 0.28
TRIM28-215ENST00000601150 GORASP1Q9BQQ3 440 aa16.79■□□□□ 0.28
TRIM28-215ENST00000601150 TMEM121Q9BTD3 319 aa16.79■□□□□ 0.28
TRIM28-215ENST00000601150 FAM83DQ9H4H8 585 aa16.79■□□□□ 0.28
TRIM28-215ENST00000601150 FGF22Q9HCT0 170 aa16.79■□□□□ 0.28
TRIM28-215ENST00000601150 SPO11Q9Y5K1 396 aa16.79■□□□□ 0.28
TRIM28-215ENST00000601150 DGKBQ9Y6T7 804 aa16.79■□□□□ 0.28
TRIM28-215ENST00000601150 NCOR2Q9Y618 2525 aa16.79■□□□□ 0.28
TRIM28-215ENST00000601150 PTPRBP23467 1997 aa16.78■□□□□ 0.28
TRIM28-215ENST00000601150 LMO7DNF2Z398 122 aa16.78■□□□□ 0.28
TRIM28-215ENST00000601150 TPP1O14773 563 aa16.78■□□□□ 0.28
TRIM28-215ENST00000601150 LIASO43766 372 aa16.78■□□□□ 0.28
TRIM28-215ENST00000601150 GCATO75600 419 aa16.78■□□□□ 0.28
TRIM28-215ENST00000601150 SOD1P00441 154 aa16.78■□□□□ 0.28
TRIM28-215ENST00000601150 SLC4A1P02730 911 aa16.78■□□□□ 0.28
TRIM28-215ENST00000601150 FGF1P05230 155 aa16.78■□□□□ 0.28
TRIM28-215ENST00000601150 CKMT2P17540 419 aa16.78■□□□□ 0.28
TRIM28-215ENST00000601150 C1orf61Q13536 156 aa16.78■□□□□ 0.28
TRIM28-215ENST00000601150 GSE1Q14687 1217 aa16.78■□□□□ 0.28
TRIM28-215ENST00000601150 ELOCQ15369 112 aa16.78■□□□□ 0.28
TRIM28-215ENST00000601150 HENMT1Q5T8I9 393 aaKnown RBP16.78■□□□□ 0.28
TRIM28-215ENST00000601150 ZCCHC8Q6NZY4 707 aaKnown RBP16.78■□□□□ 0.28
TRIM28-215ENST00000601150 ARHGEF18Q6ZSZ5 1173 aa16.78■□□□□ 0.28
TRIM28-215ENST00000601150 NYAP1Q6ZVC0 841 aa16.78■□□□□ 0.28
TRIM28-215ENST00000601150 SDR16C5Q8N3Y7 309 aa16.78■□□□□ 0.28
TRIM28-215ENST00000601150 ADAMTS14Q8WXS8 1223 aa16.78■□□□□ 0.28
TRIM28-215ENST00000601150 EID2BQ96D98 161 aa16.78■□□□□ 0.28
TRIM28-215ENST00000601150 HIC2Q96JB3 615 aa16.78■□□□□ 0.28
TRIM28-215ENST00000601150 WDR24Q96S15 920 aa16.78■□□□□ 0.28
TRIM28-215ENST00000601150 FICDQ9BVA6 458 aa16.78■□□□□ 0.28
TRIM28-215ENST00000601150 FRMD8Q9BZ67 464 aaPredicted RBP16.78■□□□□ 0.28
TRIM28-215ENST00000601150 CDH19Q9H159 772 aa16.78■□□□□ 0.28
TRIM28-215ENST00000601150 TRABDQ9H4I3 376 aa16.78■□□□□ 0.28
TRIM28-215ENST00000601150 RAD18Q9NS91 495 aa16.78■□□□□ 0.28
TRIM28-215ENST00000601150 HACD3Q9P035 362 aa16.78■□□□□ 0.28
TRIM28-215ENST00000601150 MOSPD1Q9UJG1 213 aa16.78■□□□□ 0.28
TRIM28-215ENST00000601150 ANGPTL2Q9UKU9 493 aa16.78■□□□□ 0.28
TRIM28-215ENST00000601150 PRSS38A1L453 326 aa16.77■□□□□ 0.28
TRIM28-215ENST00000601150 DKK1O94907 266 aa16.77■□□□□ 0.28
TRIM28-215ENST00000601150 AGTP01019 485 aa16.77■□□□□ 0.28
TRIM28-215ENST00000601150 ANXA6P08133 673 aa16.77■□□□□ 0.28
TRIM28-215ENST00000601150 STIP1P31948 543 aaKnown RBP16.77■□□□□ 0.28
TRIM28-215ENST00000601150 DCDC1P59894 354 aa16.77■□□□□ 0.28
TRIM28-215ENST00000601150 SHC2P98077 582 aa16.77■□□□□ 0.28
TRIM28-215ENST00000601150 DNAJC3Q13217 504 aa16.77■□□□□ 0.28
TRIM28-215ENST00000601150 OASLQ15646 514 aaKnown RBP16.77■□□□□ 0.28
TRIM28-215ENST00000601150 PARP6Q2NL67 630 aa16.77■□□□□ 0.28
TRIM28-215ENST00000601150 DEFB133Q30KQ1 61 aa16.77■□□□□ 0.28
TRIM28-215ENST00000601150 CCDC157Q569K6 752 aa16.77■□□□□ 0.28
TRIM28-215ENST00000601150 KCTD16Q68DU8 428 aa16.77■□□□□ 0.28
TRIM28-215ENST00000601150 RAB44Q7Z6P3 723 aaPredicted RBP16.77■□□□□ 0.28
TRIM28-215ENST00000601150 FAM181AQ8N9Y4 354 aa16.77■□□□□ 0.28
TRIM28-215ENST00000601150 MAIP1Q8WWC4 291 aa16.77■□□□□ 0.28
TRIM28-215ENST00000601150 C1orf54Q8WWF1 131 aa16.77■□□□□ 0.28
TRIM28-215ENST00000601150 LRRC45Q96CN5 670 aa16.77■□□□□ 0.28
TRIM28-215ENST00000601150 AGAP2Q99490 1192 aa16.77■□□□□ 0.28
TRIM28-215ENST00000601150 CLPBQ9H078 707 aa16.77■□□□□ 0.28
TRIM28-215ENST00000601150 CYP4F12Q9HCS2 524 aa16.77■□□□□ 0.28
TRIM28-215ENST00000601150 MRPL40Q9NQ50 206 aaKnown RBP16.77■□□□□ 0.28
TRIM28-215ENST00000601150 EVA1BQ9NVM1 165 aa16.77■□□□□ 0.28
TRIM28-215ENST00000601150 NFKBIL1Q9UBC1 381 aaPredicted RBP16.77■□□□□ 0.28
TRIM28-215ENST00000601150 DOLKQ9UPQ8 538 aa16.77■□□□□ 0.28
TRIM28-215ENST00000601150 JRKLQ9Y4A0 524 aa16.77■□□□□ 0.28
TRIM28-215ENST00000601150 PCDHGA1Q9Y5H4 931 aa16.77■□□□□ 0.28
TRIM28-215ENST00000601150 AURKAO14965 403 aa16.76■□□□□ 0.27
TRIM28-215ENST00000601150 INPP4BO15327 924 aa16.76■□□□□ 0.27
TRIM28-215ENST00000601150 YY2O15391 372 aa16.76■□□□□ 0.27
TRIM28-215ENST00000601150 CEP104O60308 925 aa16.76■□□□□ 0.27
TRIM28-215ENST00000601150 CEACAM5P06731 702 aa16.76■□□□□ 0.27
TRIM28-215ENST00000601150 ACP1P24666 158 aa16.76■□□□□ 0.27
TRIM28-215ENST00000601150 ADRA1AP35348 466 aa16.76■□□□□ 0.27
TRIM28-215ENST00000601150 ACADVLP49748 655 aa16.76■□□□□ 0.27
TRIM28-215ENST00000601150 GDF10P55107 478 aa16.76■□□□□ 0.27
TRIM28-215ENST00000601150 DAB2P98082 770 aa16.76■□□□□ 0.27
TRIM28-215ENST00000601150 P3H1Q32P28 736 aa16.76■□□□□ 0.27
TRIM28-215ENST00000601150 LVRNQ6Q4G3 990 aa16.76■□□□□ 0.27
TRIM28-215ENST00000601150 RANBP10Q6VN20 620 aa16.76■□□□□ 0.27
TRIM28-215ENST00000601150 GKN2Q86XP6 184 aa16.76■□□□□ 0.27
TRIM28-215ENST00000601150 KLHDC8BQ8IXV7 354 aa16.76■□□□□ 0.27
TRIM28-215ENST00000601150 TTC30BQ8N4P2 665 aa16.76■□□□□ 0.27
TRIM28-215ENST00000601150 CHCHD4Q8N4Q1 142 aa16.76■□□□□ 0.27
TRIM28-215ENST00000601150 GPR26Q8NDV2 337 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms