RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 AP3B1O00203 1094 aa19.27■□□□□ 0.68
UPF1-209ENST00000600310 TTI1O43156 1089 aa19.27■□□□□ 0.68
UPF1-209ENST00000600310 PPFIA2O75334 1257 aa19.27■□□□□ 0.68
UPF1-209ENST00000600310 SOD1P00441 154 aa19.27■□□□□ 0.68
UPF1-209ENST00000600310 PYGLP06737 847 aa19.27■□□□□ 0.68
UPF1-209ENST00000600310 HOXC4P09017 264 aaPredicted RBP19.27■□□□□ 0.68
UPF1-209ENST00000600310 LPOP22079 712 aaPredicted RBP19.27■□□□□ 0.68
UPF1-209ENST00000600310 ZDHHC20Q5W0Z9 365 aa19.27■□□□□ 0.68
UPF1-209ENST00000600310 RAET1GQ6H3X3 334 aa19.27■□□□□ 0.68
UPF1-209ENST00000600310 SLC22A18ASQ8N1D0 253 aa19.27■□□□□ 0.68
UPF1-209ENST00000600310 ERVMER34-1Q9H9K5 563 aa19.27■□□□□ 0.68
UPF1-209ENST00000600310 BPIFA1Q9NP55 256 aa19.27■□□□□ 0.68
UPF1-209ENST00000600310 PKP3Q9Y446 797 aa19.27■□□□□ 0.68
UPF1-209ENST00000600310 FAM187AA6NFU0 413 aa19.26■□□□□ 0.67
UPF1-209ENST00000600310 STX7O15400 261 aaKnown RBP19.26■□□□□ 0.67
UPF1-209ENST00000600310 LDB2O43679 373 aa19.26■□□□□ 0.67
UPF1-209ENST00000600310 BUD23O43709 281 aaKnown RBP19.26■□□□□ 0.67
UPF1-209ENST00000600310 IVDP26440 423 aa19.26■□□□□ 0.67
UPF1-209ENST00000600310 GPR1P46091 355 aa19.26■□□□□ 0.67
UPF1-209ENST00000600310 TERF1P54274 439 aa19.26■□□□□ 0.67
UPF1-209ENST00000600310 SARNPP82979 210 aaKnown RBP19.26■□□□□ 0.67
UPF1-209ENST00000600310 PDE1BQ01064 536 aa19.26■□□□□ 0.67
UPF1-209ENST00000600310 PDE1CQ14123 709 aaPredicted RBP19.26■□□□□ 0.67
UPF1-209ENST00000600310 PTK2BQ14289 1009 aa19.26■□□□□ 0.67
UPF1-209ENST00000600310 POU6F1Q14863 301 aa19.26■□□□□ 0.67
UPF1-209ENST00000600310 AASDHQ4L235 1098 aaPredicted RBP19.26■□□□□ 0.67
UPF1-209ENST00000600310 ANKRD22Q5VYY1 191 aa19.26■□□□□ 0.67
UPF1-209ENST00000600310 LRRC8BQ6P9F7 803 aa19.26■□□□□ 0.67
UPF1-209ENST00000600310 ZNF534Q76KX8 674 aa19.26■□□□□ 0.67
UPF1-209ENST00000600310 MAATS1Q7Z4T9 603 aa19.26■□□□□ 0.67
UPF1-209ENST00000600310 NAT8LQ8N9F0 302 aa19.26■□□□□ 0.67
UPF1-209ENST00000600310 MCUQ8NE86 351 aa19.26■□□□□ 0.67
UPF1-209ENST00000600310 DTX3LQ8TDB6 740 aa19.26■□□□□ 0.67
UPF1-209ENST00000600310 PLEKHG4BQ96PX9 1271 aa19.26■□□□□ 0.67
UPF1-209ENST00000600310 AGAP2Q99490 1192 aa19.26■□□□□ 0.67
UPF1-209ENST00000600310 TEX101Q9BY14 249 aa19.26■□□□□ 0.67
UPF1-209ENST00000600310 WDR26Q9H7D7 661 aa19.26■□□□□ 0.67
UPF1-209ENST00000600310 RXFP3Q9NSD7 469 aa19.26■□□□□ 0.67
UPF1-209ENST00000600310 OR1A2Q9Y585 309 aa19.26■□□□□ 0.67
UPF1-209ENST00000600310 DYNC1LI1Q9Y6G9 523 aaKnown RBP19.26■□□□□ 0.67
UPF1-209ENST00000600310 FAM186AA6NE01 2351 aa19.26■□□□□ 0.67
UPF1-209ENST00000600310 PI4KAP42356 2102 aa19.25■□□□□ 0.67
UPF1-209ENST00000600310 PCDH15Q96QU1 1955 aa19.25■□□□□ 0.67
UPF1-209ENST00000600310 SPTY2D1-AS1A0A0U1RR47 76 aa19.25■□□□□ 0.67
UPF1-209ENST00000600310 DNALI1O14645 258 aaPredicted RBP19.25■□□□□ 0.67
UPF1-209ENST00000600310 ZNF500O60304 480 aaPredicted RBP19.25■□□□□ 0.67
UPF1-209ENST00000600310 TMEM63AO94886 807 aa19.25■□□□□ 0.67
UPF1-209ENST00000600310 ZNF140P52738 457 aaPredicted RBP19.25■□□□□ 0.67
UPF1-209ENST00000600310 THOP1P52888 689 aa19.25■□□□□ 0.67
UPF1-209ENST00000600310 ATXN3P54252 364 aaPredicted RBP19.25■□□□□ 0.67
UPF1-209ENST00000600310 KIAA1024LP59773 190 aa19.25■□□□□ 0.67
UPF1-209ENST00000600310 CDK3Q00526 305 aa19.25■□□□□ 0.67
UPF1-209ENST00000600310 PTPRCAPQ14761 206 aa19.25■□□□□ 0.67
UPF1-209ENST00000600310 NFATC4Q14934 902 aa19.25■□□□□ 0.67
UPF1-209ENST00000600310 ZNF423Q2M1K9 1284 aa19.25■□□□□ 0.67
UPF1-209ENST00000600310 HLA-BQ31612 363 aa19.25■□□□□ 0.67
UPF1-209ENST00000600310 TPRG1LQ5T0D9 272 aa19.25■□□□□ 0.67
UPF1-209ENST00000600310 CERCAMQ5T4B2 595 aa19.25■□□□□ 0.67
UPF1-209ENST00000600310 RNASEH2BQ5TBB1 312 aaKnown RBP19.25■□□□□ 0.67
UPF1-209ENST00000600310 ALS2CLQ60I27 953 aa19.25■□□□□ 0.67
UPF1-209ENST00000600310 ADAMTSL4Q6UY14 1074 aa19.25■□□□□ 0.67
UPF1-209ENST00000600310 PCGF5Q86SE9 256 aa19.25■□□□□ 0.67
UPF1-209ENST00000600310 PPIL6Q8IXY8 311 aa19.25■□□□□ 0.67
UPF1-209ENST00000600310 OXR1Q8N573 874 aa19.25■□□□□ 0.67
UPF1-209ENST00000600310 TRAM1L1Q8N609 369 aa19.25■□□□□ 0.67
UPF1-209ENST00000600310 OR4K2Q8NGD2 314 aa19.25■□□□□ 0.67
UPF1-209ENST00000600310 FUBP1Q96AE4 644 aaKnown RBP19.25■□□□□ 0.67
UPF1-209ENST00000600310 RANBP9Q96S59 729 aa19.25■□□□□ 0.67
UPF1-209ENST00000600310 TRIM51Q9BSJ1 452 aa19.25■□□□□ 0.67
UPF1-209ENST00000600310 EDEM2Q9BV94 578 aa19.25■□□□□ 0.67
UPF1-209ENST00000600310 GTPBP2Q9BX10 602 aaKnown RBP19.25■□□□□ 0.67
UPF1-209ENST00000600310 IL26Q9NPH9 171 aa19.25■□□□□ 0.67
UPF1-209ENST00000600310 KCTD3Q9Y597 815 aa19.25■□□□□ 0.67
UPF1-209ENST00000600310 MROH6A6NGR9 719 aa19.24■□□□□ 0.67
UPF1-209ENST00000600310 FADS2P1A8MWK0 482 aa19.24■□□□□ 0.67
UPF1-209ENST00000600310 CACNB4O00305 520 aaPredicted RBP19.24■□□□□ 0.67
UPF1-209ENST00000600310 CDX4O14627 284 aaPredicted RBP19.24■□□□□ 0.67
UPF1-209ENST00000600310 RAD51CO43502 376 aa19.24■□□□□ 0.67
UPF1-209ENST00000600310 DFNA5O60443 496 aa19.24■□□□□ 0.67
UPF1-209ENST00000600310 CER1O95813 267 aa19.24■□□□□ 0.67
UPF1-209ENST00000600310 MLNP12872 115 aa19.24■□□□□ 0.67
UPF1-209ENST00000600310 ADRA1DP25100 572 aa19.24■□□□□ 0.67
UPF1-209ENST00000600310 PSMA3P25788 255 aa19.24■□□□□ 0.67
UPF1-209ENST00000600310 HTR1BP28222 390 aa19.24■□□□□ 0.67
UPF1-209ENST00000600310 SPAM1P38567 509 aa19.24■□□□□ 0.67
UPF1-209ENST00000600310 NPY2RP49146 381 aa19.24■□□□□ 0.67
UPF1-209ENST00000600310 LAMB3Q13751 1172 aa19.24■□□□□ 0.67
UPF1-209ENST00000600310 FZD2Q14332 565 aa19.24■□□□□ 0.67
UPF1-209ENST00000600310 PDPK2PQ6A1A2 396 aa19.24■□□□□ 0.67
UPF1-209ENST00000600310 MACC1Q6ZN28 852 aa19.24■□□□□ 0.67
UPF1-209ENST00000600310 HEATR4Q86WZ0 1026 aa19.24■□□□□ 0.67
UPF1-209ENST00000600310 MINDY1Q8N5J2 469 aa19.24■□□□□ 0.67
UPF1-209ENST00000600310 MNS1Q8NEH6 495 aa19.24■□□□□ 0.67
UPF1-209ENST00000600310 STYXQ8WUJ0 223 aa19.24■□□□□ 0.67
UPF1-209ENST00000600310 ELF4Q99607 663 aaPredicted RBP19.24■□□□□ 0.67
UPF1-209ENST00000600310 ZSCAN5AQ9BUG6 496 aa19.24■□□□□ 0.67
UPF1-209ENST00000600310 LGR4Q9BXB1 951 aa19.24■□□□□ 0.67
UPF1-209ENST00000600310 GAREM1Q9H706 876 aa19.24■□□□□ 0.67
UPF1-209ENST00000600310 PHPT1Q9NRX4 125 aaPredicted RBP19.24■□□□□ 0.67
UPF1-209ENST00000600310 BFARQ9NZS9 450 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms